Literature DB >> 30124147

Survey of Machine Learning Techniques in Drug Discovery.

Natalie Stephenson1, Emily Shane1, Jessica Chase1, Jason Rowland1, David Ries1, Nicola Justice2, Jie Zhang3, Leong Chan4, Renzhi Cao1.   

Abstract

BACKGROUND: Drug discovery, which is the process of discovering new candidate medications, is very important for pharmaceutical industries. At its current stage, discovering new drugs is still a very expensive and time-consuming process, requiring Phases I, II and III for clinical trials. Recently, machine learning techniques in Artificial Intelligence (AI), especially the deep learning techniques which allow a computational model to generate multiple layers, have been widely applied and achieved state-of-the-art performance in different fields, such as speech recognition, image classification, bioinformatics, etc. One very important application of these AI techniques is in the field of drug discovery.
METHODS: We did a large-scale literature search on existing scientific websites (e.g, ScienceDirect, Arxiv) and startup companies to understand current status of machine learning techniques in drug discovery.
RESULTS: Our experiments demonstrated that there are different patterns in machine learning fields and drug discovery fields. For example, keywords like prediction, brain, discovery, and treatment are usually in drug discovery fields. Also, the total number of papers published in drug discovery fields with machine learning techniques is increasing every year.
CONCLUSION: The main focus of this survey is to understand the current status of machine learning techniques in the drug discovery field within both academic and industrial settings, and discuss its potential future applications. Several interesting patterns for machine learning techniques in drug discovery fields are discussed in this survey. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.net.

Keywords:  Drug discovery; artificial intelligence; deep learning; drug development; machine learning; pharmacology.

Mesh:

Year:  2019        PMID: 30124147     DOI: 10.2174/1389200219666180820112457

Source DB:  PubMed          Journal:  Curr Drug Metab        ISSN: 1389-2002            Impact factor:   3.731


  22 in total

1.  Classification and comparison via neural networks.

Authors:  İlkay Yıldız; Peng Tian; Jennifer Dy; Deniz Erdoğmuş; James Brown; Jayashree Kalpathy-Cramer; Susan Ostmo; J Peter Campbell; Michael F Chiang; Stratis Ioannidis
Journal:  Neural Netw       Date:  2019-06-19

2.  Hyperspectral imaging for chemicals identification: a human-inspired machine learning approach.

Authors:  Shai Kendler; Ziv Mano; Ran Aharoni; Raviv Raich; Barak Fishbain
Journal:  Sci Rep       Date:  2022-10-20       Impact factor: 4.996

3.  Artificial intelligence (AI) in medicine as a strategic valuable tool.

Authors:  Andreas Larentzakis; Nik Lygeros
Journal:  Pan Afr Med J       Date:  2021-02-17

4.  iGHBP: Computational identification of growth hormone binding proteins from sequences using extremely randomised tree.

Authors:  Shaherin Basith; Balachandran Manavalan; Tae Hwan Shin; Gwang Lee
Journal:  Comput Struct Biotechnol J       Date:  2018-10-24       Impact factor: 7.271

5.  Gene2vec: gene subsequence embedding for prediction of mammalian N 6-methyladenosine sites from mRNA.

Authors:  Quan Zou; Pengwei Xing; Leyi Wei; Bin Liu
Journal:  RNA       Date:  2018-11-13       Impact factor: 4.942

Review 6.  Alkaloids in Contemporary Drug Discovery to Meet Global Disease Needs.

Authors:  Sharna-Kay Daley; Geoffrey A Cordell
Journal:  Molecules       Date:  2021-06-22       Impact factor: 4.411

7.  SDM6A: A Web-Based Integrative Machine-Learning Framework for Predicting 6mA Sites in the Rice Genome.

Authors:  Shaherin Basith; Balachandran Manavalan; Tae Hwan Shin; Gwang Lee
Journal:  Mol Ther Nucleic Acids       Date:  2019-08-16       Impact factor: 8.886

8.  AOPs-SVM: A Sequence-Based Classifier of Antioxidant Proteins Using a Support Vector Machine.

Authors:  Chaolu Meng; Shunshan Jin; Lei Wang; Fei Guo; Quan Zou
Journal:  Front Bioeng Biotechnol       Date:  2019-09-18

9.  iRNA-m7G: Identifying N7-methylguanosine Sites by Fusing Multiple Features.

Authors:  Wei Chen; Pengmian Feng; Xiaoming Song; Hao Lv; Hao Lin
Journal:  Mol Ther Nucleic Acids       Date:  2019-08-28       Impact factor: 8.886

10.  Early Diagnosis of Hepatocellular Carcinoma Using Machine Learning Method.

Authors:  Zi-Mei Zhang; Jiu-Xin Tan; Fang Wang; Fu-Ying Dao; Zhao-Yue Zhang; Hao Lin
Journal:  Front Bioeng Biotechnol       Date:  2020-03-27
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