| Literature DB >> 30123928 |
Luis Franco-Serrano1, Mario Huerta1, Sergio Hernández1, Juan Cedano2, JosepAntoni Perez-Pons1, Jaume Piñol1, Angel Mozo-Villarias3, Isaac Amela1, Enrique Querol4.
Abstract
Multifunctionality or multitasking is the capability of some proteins to execute two or more biochemical functions. The objective of this work is to explore the relationship between multifunctional proteins, human diseases and drug targeting. The analysis of the proportion of multitasking proteins from the MultitaskProtDB-II database shows that 78% of the proteins analyzed are involved in human diseases. This percentage is much higher than the 17.9% found in human proteins in general. A similar analysis using drug target databases shows that 48% of these analyzed human multitasking proteins are targets of current drugs, while only 9.8% of the human proteins present in UniProt are specified as drug targets. In almost 50% of these proteins, both the canonical and moonlighting functions are related to the molecular basis of the disease. A procedure to identify multifunctional proteins from disease databases and a method to structurally map the canonical and moonlighting functions of the protein have also been proposed here. Both of the previous percentages suggest that multitasking is not a rare phenomenon in proteins causing human diseases, and that their detailed study might explain some collateral drug effects.Entities:
Keywords: Drug targets; Human diseases; Multitasking proteins; Protein function
Mesh:
Substances:
Year: 2018 PMID: 30123928 PMCID: PMC6132618 DOI: 10.1007/s10930-018-9790-x
Source DB: PubMed Journal: Protein J ISSN: 1572-3887 Impact factor: 2.371
Fig. 1Chart flow representation of the process followed to predict moonlighting proteins using OMIM database, structural analysis and protein interaction
Examples of moonlighting proteins involved in human diseases and drug targets
| Protein name (*) | Canonical function | Moonlighting function | Disease | Molecular process reference (*) | Drug targets (*) |
|---|---|---|---|---|---|
| Cyclooxygenase 1 | Prostaglandin G/H synthase | Heme-dependent peroxidase | (C) Bleeding disorder type 12 | Brit. J. Haemat. 92: 212–217, 1996 | YES |
| Gephyrin, protein anchor | Microtubule-associated protein | Synthesis of molybdenum cofactor (MoCo | (M) Molybdenum cofactor deficiency C | Am J Hum Genet. 2001 Jan;68(1):208–13 | YES |
| Ribosomal S3 protein | Ribosomal protein | DNA repair | (M) Colon adenocarcinomas | 10.1016/j.tig.2014.06.003 | NO |
| Succinyl-coA synthetase | Succinyl-CoA synthetase | Mitochondrial DNA maintenance | (M) Mitochondrial DNA depletion syndrome 9 (encephalomyopathic type) | J. Med. Genet. 47: 670–676, 2010 | YES |
| Fumarate hydratase | TCA cycle | Tumor suppressor | (C) Fumarase deficiency | Oncogene. 2015 Mar 19;34(12):1475–86 | NO |
| ERCC2—TFIIH | DNA helicase | It is also a subunit of TFIIH, a basal transcription factor | (C) Xeroderma pigmentosum | - Mutat Res. 1992 Mar;273(2):193–202 | NO |
| Alpha-crystallin A chain | Lens crystallin | Heat-shock protein | (C) Cataract | Biomed Pap Med Fac Univ Palacky Olomouc Czech Repub. 2005 Dec;149(2):243–9 | YES |
| Hes 1 protein | Transcriptional repressor | It is able to induce the activation of the NF-kB pathway in T Cell Leukemia | (M) Leukemia, myeloid/lymphoid or mixed-lineage | Cancer Cell. 2004 Sep;6(3):203–8 | NO |
| PIAS1 | Inhibition of activated STAT | Activation of p53 | (M) Cancer | Cold Spring Harb Perspect Biol. 2009 Nov; 1(5): a001883 | NO |
| Phosphoglucose isomerase | Glycolysis | Neuroleukin, differentiation and maturation factor/nerve growth factor/stimulation of cell migration/implantation factor/modulator of tumor progression and a target for cancer therapy/sperm surface antigen | (C) Hemolytic anemia PGI deficiency | - Harefuah. 1994 Jun 15;126(12):699–702, 764, 763 | YES |
C Disease related to canonical function, M Disease related to moonlighting function
*Entries are linked to the corresponding information
Fig. 2A1 Distribution of disorders associated with human moonlighting proteins and their relative percentages. A2 Distribution of disorders associated to human proteins, in general. B1 Functional classification of drug-target moonlighting proteins and their relative percentages. B2 Functional classification of drug-target in general, and their relative percentages
Examples of predicted human moonlighting proteins and their associated genetic diseases
| Protein and UniProt descriptors (*) | Canonical (C) and predicted moonlighting functions (M) | Associated diseases and reference (*) | Interactomics partners (*) | PISITE models (*) |
|---|---|---|---|---|
| 3-hydroxyacyl-CoA dehydrogenase type-2 | (C) mitochondrial ribonuclease P | (1) 2-methyl-3-hydroxybutyryl-CoA dehydrogenase deficiency (MHBD deficiency) | (1)Amyloid beta A4 protein | (1) 3-hydroxyacyl-CoA dehydrogenase type-2 |
| Pyruvate kinase PKLR | (C) Glycolysis | (1) Pyruvate kinase hyperactivity (PKHYP) | (1) Myocilin | No relevant matches found |
| Fanconi anemia group J protein | (C) DNA-dependent ATPase and 5′ to 3′ DNA helicase | (1) Breast cancer (BC) | (1) Breast cancer type 1 susceptibility protein | No relevant matches found |
| 85/88 kDa calcium-independent phospholipase A2 | (C) Catalyzes the release of fatty acids from phospholipids | (1) Neurodegeneration with brain iron accumulation 2B (NBIA2B) | (1) BAG family molecular chaperone regulator 3 | (1) CASPASE-2 PDBID: 2p2c CHAIN:U |
| Alpha-aminoadipic semialdehyde synthase, mitocondrial | (C) Lysine-ketoglutarate reductase | (1) Hyperlysinemia, 1 (HYPLYS1) | (1) mRNA-decapping enzyme 1A | (1) SACCHAROPINE DEHYDROGENASE |
*Entries are linked to the corresponding information
Fig. 3Structure of human fumarate hydratase tetramer (P07954). This protein has two associated diseases: fumarase deficiency (FD) and hereditary leiomyomatosis plus renal cell cancer (HLRCC). Marked in red are the mutations related to FD, and in blue are those related to HLRCC. Mutations associated with both diseases are in yellow