Literature DB >> 30121743

Biophysical nanotools for single-molecule dynamics.

Qian Peter Su1, Lining Arnold Ju2.   

Abstract

The focus of the cell biology field is now shifting from characterizing cellular activities to organelle and molecular behaviors. This process accompanies the development of new biophysical visualization techniques that offer high spatial and temporal resolutions with ultra-sensitivity and low cell toxicity. They allow the biology research community to observe dynamic behaviors from scales of single molecules, organelles, cells to organoids, and even live animal tissues. In this review, we summarize these biophysical techniques into two major classes: the mechanical nanotools like dynamic force spectroscopy (DFS) and the optical nanotools like single-molecule and super-resolution microscopy. We also discuss their applications in elucidating molecular dynamics and functionally mapping of interactions between inter-cellular networks and intra-cellular components, which is key to understanding cellular processes such as adhesion, trafficking, inheritance, and division.

Entities:  

Keywords:  Biophysical nanotools; Dynamic Force Spectroscopy (DFS); Single-molecule micrcoscopy; Super-resolution microscopy

Year:  2018        PMID: 30121743      PMCID: PMC6233351          DOI: 10.1007/s12551-018-0447-y

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  84 in total

1.  Fluorescence Biomembrane Force Probe: Concurrent Quantitation of Receptor-ligand Kinetics and Binding-induced Intracellular Signaling on a Single Cell.

Authors:  Yunfeng Chen; Baoyu Liu; Lining Ju; Jinsung Hong; Qinghua Ji; Wei Chen; Cheng Zhu
Journal:  J Vis Exp       Date:  2015-08-04       Impact factor: 1.355

2.  Two-Dimensional Analysis of Cross-Junctional Molecular Interaction by Force Probes.

Authors:  Lining Ju; Yunfeng Chen; Muaz Nik Rushdi; Wei Chen; Cheng Zhu
Journal:  Methods Mol Biol       Date:  2017

3.  Mechanosensing drives acuity of αβ T-cell recognition.

Authors:  Yinnian Feng; Kristine N Brazin; Eiji Kobayashi; Robert J Mallis; Ellis L Reinherz; Matthew J Lang
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-15       Impact factor: 11.205

4.  Identification of a juxtamembrane mechanosensitive domain in the platelet mechanosensor glycoprotein Ib-IX complex.

Authors:  Wei Zhang; Wei Deng; Liang Zhou; Yan Xu; Wenjun Yang; Xin Liang; Yizhen Wang; John D Kulman; X Frank Zhang; Renhao Li
Journal:  Blood       Date:  2014-10-30       Impact factor: 22.113

5.  Force-dependent transition in the T-cell receptor β-subunit allosterically regulates peptide discrimination and pMHC bond lifetime.

Authors:  Dibyendu Kumar Das; Yinnian Feng; Robert J Mallis; Xiaolong Li; Derin B Keskin; Rebecca E Hussey; Sonia K Brady; Jia-Huai Wang; Gerhard Wagner; Ellis L Reinherz; Matthew J Lang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-20       Impact factor: 11.205

6.  Entanglement-Based Thermoplastic Shape Memory Polymeric Particles with Photothermal Actuation for Biomedical Applications.

Authors:  Qiongyu Guo; Corey J Bishop; Randall A Meyer; David R Wilson; Lauren Olasov; Daphne E Schlesinger; Patrick T Mather; James B Spicer; Jennifer H Elisseeff; Jordan J Green
Journal:  ACS Appl Mater Interfaces       Date:  2018-04-10       Impact factor: 9.229

7.  Nanoscopy with more than 100,000 'doughnuts'.

Authors:  Andriy Chmyrov; Jan Keller; Tim Grotjohann; Michael Ratz; Elisa d'Este; Stefan Jakobs; Christian Eggeling; Stefan W Hell
Journal:  Nat Methods       Date:  2013-07-07       Impact factor: 28.547

8.  Stretching single talin rod molecules activates vinculin binding.

Authors:  Armando del Rio; Raul Perez-Jimenez; Ruchuan Liu; Pere Roca-Cusachs; Julio M Fernandez; Michael P Sheetz
Journal:  Science       Date:  2009-01-30       Impact factor: 63.714

9.  Patient-derived organoids model treatment response of metastatic gastrointestinal cancers.

Authors:  Georgios Vlachogiannis; Somaieh Hedayat; Alexandra Vatsiou; Yann Jamin; Javier Fernández-Mateos; Khurum Khan; Andrea Lampis; Katherine Eason; Ian Huntingford; Rosemary Burke; Mihaela Rata; Dow-Mu Koh; Nina Tunariu; David Collins; Sanna Hulkki-Wilson; Chanthirika Ragulan; Inmaculada Spiteri; Sing Yu Moorcraft; Ian Chau; Sheela Rao; David Watkins; Nicos Fotiadis; Maria Bali; Mahnaz Darvish-Damavandi; Hazel Lote; Zakaria Eltahir; Elizabeth C Smyth; Ruwaida Begum; Paul A Clarke; Jens C Hahne; Mitchell Dowsett; Johann de Bono; Paul Workman; Anguraj Sadanandam; Matteo Fassan; Owen J Sansom; Suzanne Eccles; Naureen Starling; Chiara Braconi; Andrea Sottoriva; Simon P Robinson; David Cunningham; Nicola Valeri
Journal:  Science       Date:  2018-02-23       Impact factor: 47.728

10.  Super-resolution imaging and tracking of protein-protein interactions in sub-diffraction cellular space.

Authors:  Zhen Liu; Dong Xing; Qian Peter Su; Yun Zhu; Jiamei Zhang; Xinyu Kong; Boxin Xue; Sheng Wang; Hao Sun; Yile Tao; Yujie Sun
Journal:  Nat Commun       Date:  2014-07-17       Impact factor: 14.919

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  8 in total

Review 1.  Tensile and compressive force regulation on cell mechanosensing.

Authors:  Yunfeng Chen; Zhiyong Li; Lining Arnold Ju
Journal:  Biophys Rev       Date:  2019-05-09

Review 2.  Single-molecule in vitro reconstitution assay for kinesin-1-driven membrane dynamics.

Authors:  Wanqing Du; Qian Peter Su
Journal:  Biophys Rev       Date:  2019-05-04

Review 3.  Insights into intercellular receptor-ligand binding kinetics in cell communication.

Authors:  Chenyi An; Xiaohuan Wang; Fan Song; Jinglei Hu; Long Li
Journal:  Front Bioeng Biotechnol       Date:  2022-06-28

Review 4.  Dynamic bonds and their roles in mechanosensing.

Authors:  Cheng Zhu; Yunfeng Chen; Lining Arnold Ju
Journal:  Curr Opin Chem Biol       Date:  2019-09-27       Impact factor: 8.822

5.  Receptor-Independent Transfer of Low Density Lipoprotein Cargo to Biomembranes.

Authors:  Markus Axmann; Erdinc Sezgin; Andreas Karner; Jiri Novacek; Michael D Brodesser; Clemens Röhrl; Johannes Preiner; Herbert Stangl; Birgit Plochberger
Journal:  Nano Lett       Date:  2019-03-08       Impact factor: 11.189

Review 6.  Micropipette-based biomechanical nanotools on living cells.

Authors:  Haoqing Wang; Fang Zhou; Yuze Guo; Lining Arnold Ju
Journal:  Eur Biophys J       Date:  2022-02-16       Impact factor: 1.733

7.  Single-Molecule Mechanics in Ligand Concentration Gradient.

Authors:  Balázs Kretzer; Bálint Kiss; Hedvig Tordai; Gabriella Csík; Levente Herényi; Miklós Kellermayer
Journal:  Micromachines (Basel)       Date:  2020-02-19       Impact factor: 2.891

Review 8.  Present Application and Perspectives of Organoid Imaging Technology.

Authors:  Keyi Fei; Jinze Zhang; Jin Yuan; Peng Xiao
Journal:  Bioengineering (Basel)       Date:  2022-03-16
  8 in total

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