Literature DB >> 30121708

Biogeography and taxonomic overview of terrestrial hot spring thermophilic phages.

Olivier Zablocki1,2, Leonardo van Zyl2, Marla Trindade3.   

Abstract

Bacterial viruses ("phages") play important roles in the regulation and evolution of microbial communities in most ecosystems. Terrestrial hot springs typically contain thermophilic bacterial communities, but the diversity and impacts of its associated viruses ("thermophilic phages") are largely unexplored. Here, we provide a taxonomic overview of phages that have been isolated strictly from terrestrial hot springs around the world. In addition, we placed 17 thermophilic phage genomes in a global phylogenomic context to detect evolutionary patterns. Thermophilic phages have diverse morphologies (e.g., tailed, filamentous), unique virion structures (e.g., extremely long tailed siphoviruses), and span five taxonomic families encompassing strictly thermophilic phage genera. Within the phage proteomic tree, six thermophilic phage-related clades were identified, with evident genomic relatedness between thermophilic phages and archaeal viruses. Moreover, whole proteome analyses showed clustering between phages that infect distinct host phyla, such as Firmicutes and Deinococcus-Thermus. The potential for discovery of novel phage-host systems in terrestrial hot springs remain mostly untapped, thus additional emphasis on thermophilic phages in ecological prospecting is encouraged to gain insights into the microbial population dynamics of these environments.

Entities:  

Keywords:  Gammasphaerolipovirus; Hot spring; Thermophilic phage; Thermus; Viral metagenomics

Mesh:

Year:  2018        PMID: 30121708     DOI: 10.1007/s00792-018-1052-5

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  57 in total

Review 1.  Global phage diversity.

Authors:  Forest Rohwer
Journal:  Cell       Date:  2003-04-18       Impact factor: 41.582

2.  Remarkable morphological diversity of viruses and virus-like particles in hot terrestrial environments.

Authors:  R Rachel; M Bettstetter; B P Hedlund; M Häring; A Kessler; K O Stetter; D Prangishvili
Journal:  Arch Virol       Date:  2002-12       Impact factor: 2.574

3.  Phage community dynamics in hot springs.

Authors:  Mya Breitbart; Linda Wegley; Steven Leeds; Tom Schoenfeld; Forest Rohwer
Journal:  Appl Environ Microbiol       Date:  2004-03       Impact factor: 4.792

4.  Conserved translational frameshift in dsDNA bacteriophage tail assembly genes.

Authors:  Jun Xu; Roger W Hendrix; Robert L Duda
Journal:  Mol Cell       Date:  2004-10-08       Impact factor: 17.970

Review 5.  The viriosphere, diversity, and genetic exchange within phage communities.

Authors:  Emma Hambly; Curtis A Suttle
Journal:  Curr Opin Microbiol       Date:  2005-08       Impact factor: 7.934

6.  Genomic and proteomic characterization of a thermophilic Geobacillus bacteriophage GBSV1.

Authors:  Bin Liu; Fengfeng Zhou; Suijie Wu; Ying Xu; Xiaobo Zhang
Journal:  Res Microbiol       Date:  2009-01-03       Impact factor: 3.992

7.  The physiology and habitat of the last universal common ancestor.

Authors:  Madeline C Weiss; Filipa L Sousa; Natalia Mrnjavac; Sinje Neukirchen; Mayo Roettger; Shijulal Nelson-Sathi; William F Martin
Journal:  Nat Microbiol       Date:  2016-07-25       Impact factor: 17.745

8.  Bipartite Network Analysis of the Archaeal Virosphere: Evolutionary Connections between Viruses and Capsidless Mobile Elements.

Authors:  Jaime Iranzo; Eugene V Koonin; David Prangishvili; Mart Krupovic
Journal:  J Virol       Date:  2016-11-28       Impact factor: 5.103

9.  ViPTree: the viral proteomic tree server.

Authors:  Yosuke Nishimura; Takashi Yoshida; Megumi Kuronishi; Hideya Uehara; Hiroyuki Ogata; Susumu Goto
Journal:  Bioinformatics       Date:  2017-08-01       Impact factor: 6.937

10.  Diversity of dsDNA Viruses in a South African Hot Spring Assessed by Metagenomics and Microscopy.

Authors:  Olivier Zablocki; Leonardo Joaquim van Zyl; Bronwyn Kirby; Marla Trindade
Journal:  Viruses       Date:  2017-11-18       Impact factor: 5.048

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  3 in total

1.  Unveiling Ecological and Genetic Novelty within Lytic and Lysogenic Viral Communities of Hot Spring Phototrophic Microbial Mats.

Authors:  Sergio Guajardo-Leiva; Fernando Santos; Oscar Salgado; Christophe Regeard; Laurent Quillet; Beatriz Díez
Journal:  Microbiol Spectr       Date:  2021-11-17

2.  Heat adaptation of phage T7 under an extended genetic code.

Authors:  Austin W Cole; Steven D Tran; Andrew D Ellington
Journal:  Virus Evol       Date:  2021-12-01

Review 3.  An Appraisal of Bacteriophage Isolation Techniques from Environment.

Authors:  Aparna Nair; Gaurav S Ghugare; Krishna Khairnar
Journal:  Microb Ecol       Date:  2021-06-17       Impact factor: 4.552

  3 in total

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