Literature DB >> 3012098

Dihydrofolate reductase. 1H resonance assignments and coenzyme-induced conformational changes.

S J Hammond, B Birdsall, M S Searle, G C Roberts, J Feeney.   

Abstract

Lactobacillus casei dihydrofolate reductase has been studied in solution by one and two-dimensional 1H nuclear magnetic resonance (n.m.r.) spectroscopy at 500 MHz. By using a combination of n.m.r. methods in conjunction with the crystal structure of the enzyme-methotrexate-NADPH complex, resonances have been assigned for 32 of the 162 residues of the enzyme. These are widely distributed throughout the structure of the protein, and include all the histidine and tyrosine residues, as well as several valine, leucine, isoleucine and phenylalanine residues. The assignments have been made for the enzyme-methotrexate and enzyme-methotrexate-NADP+ complexes as well as the enzyme-methotrexate-NADPH complex. Comparison of assigned resonances in the spectra of the three complexes has permitted a preliminary assessment of structural differences between them. The beta-sheet "core" of the protein is unaffected by coenzyme binding, but two regions of the structure that undergo coenzyme-induced conformation changes have been identified. These are the loop comprising residues 13 to 23, and alpha-helix C (residues 42 to 49).

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Year:  1986        PMID: 3012098     DOI: 10.1016/0022-2836(86)90483-3

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  7 in total

1.  Chemical exchange in two dimensions in the 1H NMR assignment of cytochrome c.

Authors:  Y Q Feng; A J Wand; H Roder; S W Englander
Journal:  Biophys J       Date:  1991-02       Impact factor: 4.033

2.  A free-energy perturbation study of the binding of methotrexate to mutants of dihydrofolate reductase.

Authors:  U C Singh; S J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  1988-12       Impact factor: 11.205

Review 3.  Protein engineering. The design, synthesis and characterization of factitious proteins.

Authors:  W V Shaw
Journal:  Biochem J       Date:  1987-08-15       Impact factor: 3.857

4.  Structure and dynamics in solution of the complex of Lactobacillus casei dihydrofolate reductase with the new lipophilic antifolate drug trimetrexate.

Authors:  V I Polshakov; B Birdsall; T A Frenkiel; A R Gargaro; J Feeney
Journal:  Protein Sci       Date:  1999-03       Impact factor: 6.725

5.  3D 13C/1H NMR-based assignments for side-chain resonances of Lactobacillus casei dihydrofolate reductase. Evidence for similarities between the solution and crystal structures of the enzyme.

Authors:  A Soteriou; M D Carr; T A Frenkiel; J E McCormick; C J Bauer; D Sali; B Birdsall; J Feeney
Journal:  J Biomol NMR       Date:  1993-09       Impact factor: 2.835

6.  Dynamics of trimethoprim bound to dihydrofolate reductase.

Authors:  M S Searle; M J Forster; B Birdsall; G C Roberts; J Feeney; H T Cheung; I Kompis; A J Geddes
Journal:  Proc Natl Acad Sci U S A       Date:  1988-06       Impact factor: 11.205

7.  NMR structures of apo L. casei dihydrofolate reductase and its complexes with trimethoprim and NADPH: contributions to positive cooperative binding from ligand-induced refolding, conformational changes, and interligand hydrophobic interactions.

Authors:  James Feeney; Berry Birdsall; Nadezhda V Kovalevskaya; Yegor D Smurnyy; Emna M Navarro Peran; Vladimir I Polshakov
Journal:  Biochemistry       Date:  2011-04-14       Impact factor: 3.162

  7 in total

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