Literature DB >> 30118385

Links between environment, diet, and the hunter-gatherer microbiome.

Gabriela K Fragiadakis1, Samuel A Smits1, Erica D Sonnenburg1, William Van Treuren1, Gregor Reid2, Rob Knight3, Alphaxard Manjurano4, John Changalucha5, Maria Gloria Dominguez-Bello6, Jeff Leach7,8, Justin L Sonnenburg1,9.   

Abstract

The study of traditional populations provides a view of human-associated microbes unperturbed by industrialization, as well as a window into the microbiota that co-evolved with humans. Here we discuss our recent work characterizing the microbiota from the Hadza hunter-gatherers of Tanzania. We found seasonal shifts in bacterial taxa, diversity, and carbohydrate utilization by the microbiota. When compared to the microbiota composition from other populations around the world, the Hadza microbiota shares bacterial families with other traditional societies that are rare or absent from microbiotas of industrialized nations. We present additional observations from the Hadza microbiota and their lifestyle and environment, including microbes detected on hands, water, and animal sources, how the microbiota varies with sex and age, and the short-term effects of introducing agricultural products into the diet. In the context of our previously published findings and of these additional observations, we discuss a path forward for future work.

Entities:  

Keywords:  Hadza; defining/profiling gut microbiome; diet; environment; human; hunter-gatherer; microbiome; seasonal

Mesh:

Substances:

Year:  2018        PMID: 30118385      PMCID: PMC6546328          DOI: 10.1080/19490976.2018.1494103

Source DB:  PubMed          Journal:  Gut Microbes        ISSN: 1949-0976


  28 in total

1.  Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa.

Authors:  Carlotta De Filippo; Duccio Cavalieri; Monica Di Paola; Matteo Ramazzotti; Jean Baptiste Poullet; Sebastien Massart; Silvia Collini; Giuseppe Pieraccini; Paolo Lionetti
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-02       Impact factor: 11.205

2.  Glycan foraging in vivo by an intestine-adapted bacterial symbiont.

Authors:  Justin L Sonnenburg; Jian Xu; Douglas D Leip; Chien-Huan Chen; Benjamin P Westover; Jeremy Weatherford; Jeremy D Buhler; Jeffrey I Gordon
Journal:  Science       Date:  2005-03-25       Impact factor: 47.728

3.  Trends in dietary fiber intake in the United States, 1999-2008.

Authors:  Dana E King; Arch G Mainous; Carol A Lambourne
Journal:  J Acad Nutr Diet       Date:  2012-04-25       Impact factor: 4.910

4.  Bacterial community variation in human body habitats across space and time.

Authors:  Elizabeth K Costello; Christian L Lauber; Micah Hamady; Noah Fierer; Jeffrey I Gordon; Rob Knight
Journal:  Science       Date:  2009-11-05       Impact factor: 47.728

5.  Linking long-term dietary patterns with gut microbial enterotypes.

Authors:  Gary D Wu; Jun Chen; Christian Hoffmann; Kyle Bittinger; Ying-Yu Chen; Sue A Keilbaugh; Meenakshi Bewtra; Dan Knights; William A Walters; Rob Knight; Rohini Sinha; Erin Gilroy; Kernika Gupta; Robert Baldassano; Lisa Nessel; Hongzhe Li; Frederic D Bushman; James D Lewis
Journal:  Science       Date:  2011-09-01       Impact factor: 47.728

6.  Bayesian community-wide culture-independent microbial source tracking.

Authors:  Dan Knights; Justin Kuczynski; Emily S Charlson; Jesse Zaneveld; Michael C Mozer; Ronald G Collman; Frederic D Bushman; Rob Knight; Scott T Kelley
Journal:  Nat Methods       Date:  2011-07-17       Impact factor: 28.547

7.  Structure, function and diversity of the healthy human microbiome.

Authors: 
Journal:  Nature       Date:  2012-06-13       Impact factor: 49.962

8.  Moving pictures of the human microbiome.

Authors:  J Gregory Caporaso; Christian L Lauber; Elizabeth K Costello; Donna Berg-Lyons; Antonio Gonzalez; Jesse Stombaugh; Dan Knights; Pawel Gajer; Jacques Ravel; Noah Fierer; Jeffrey I Gordon; Rob Knight
Journal:  Genome Biol       Date:  2011       Impact factor: 13.583

9.  Human gut microbiome viewed across age and geography.

Authors:  Tanya Yatsunenko; Federico E Rey; Mark J Manary; Indi Trehan; Maria Gloria Dominguez-Bello; Monica Contreras; Magda Magris; Glida Hidalgo; Robert N Baldassano; Andrey P Anokhin; Andrew C Heath; Barbara Warner; Jens Reeder; Justin Kuczynski; J Gregory Caporaso; Catherine A Lozupone; Christian Lauber; Jose Carlos Clemente; Dan Knights; Rob Knight; Jeffrey I Gordon
Journal:  Nature       Date:  2012-05-09       Impact factor: 49.962

10.  The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics.

Authors:  Brandi L Cantarel; Pedro M Coutinho; Corinne Rancurel; Thomas Bernard; Vincent Lombard; Bernard Henrissat
Journal:  Nucleic Acids Res       Date:  2008-10-05       Impact factor: 16.971

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  35 in total

1.  Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans.

Authors:  Michael L Patnode; Zachary W Beller; Nathan D Han; Jiye Cheng; Samantha L Peters; Nicolas Terrapon; Bernard Henrissat; Sophie Le Gall; Luc Saulnier; David K Hayashi; Alexandra Meynier; Sophie Vinoy; Richard J Giannone; Robert L Hettich; Jeffrey I Gordon
Journal:  Cell       Date:  2019-09-19       Impact factor: 41.582

Review 2.  Pursuing Human-Relevant Gut Microbiota-Immune Interactions.

Authors:  Sean P Spencer; Gabriela K Fragiadakis; Justin L Sonnenburg
Journal:  Immunity       Date:  2019-08-20       Impact factor: 31.745

Review 3.  Akkermansia muciniphila: paradigm for next-generation beneficial microorganisms.

Authors:  Patrice D Cani; Clara Depommier; Muriel Derrien; Amandine Everard; Willem M de Vos
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2022-05-31       Impact factor: 73.082

4.  A plasmid network from the gut microbiome of semi-isolated human groups reveals unique and shared metabolic and virulence traits.

Authors:  Liliane Costa Conteville; Ana Carolina Paulo Vicente
Journal:  Sci Rep       Date:  2022-07-15       Impact factor: 4.996

Review 5.  Gut Microbiome in Anesthesiology and Pain Medicine.

Authors:  Amir Minerbi; Shiqian Shen
Journal:  Anesthesiology       Date:  2022-07-01       Impact factor: 8.986

Review 6.  Healthy Human Gastrointestinal Microbiome: Composition and Function After a Decade of Exploration.

Authors:  Wenly Ruan; Melinda A Engevik; Jennifer K Spinler; James Versalovic
Journal:  Dig Dis Sci       Date:  2020-03       Impact factor: 3.199

7.  Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates.

Authors:  Hannah Fehlner-Peach; Cara Magnabosco; Varsha Raghavan; Jose U Scher; Adrian Tett; Laura M Cox; Claire Gottsegen; Aaron Watters; John D Wiltshire-Gordon; Nicola Segata; Richard Bonneau; Dan R Littman
Journal:  Cell Host Microbe       Date:  2019-11-13       Impact factor: 21.023

8.  Reconstruction of ancient microbial genomes from the human gut.

Authors:  Marsha C Wibowo; Zhen Yang; Maxime Borry; Alexander Hübner; Kun D Huang; Braden T Tierney; Samuel Zimmerman; Francisco Barajas-Olmos; Cecilia Contreras-Cubas; Humberto García-Ortiz; Angélica Martínez-Hernández; Jacob M Luber; Philipp Kirstahler; Tre Blohm; Francis E Smiley; Richard Arnold; Sonia A Ballal; Sünje Johanna Pamp; Julia Russ; Frank Maixner; Omar Rota-Stabelli; Nicola Segata; Karl Reinhard; Lorena Orozco; Christina Warinner; Meradeth Snow; Steven LeBlanc; Aleksandar D Kostic
Journal:  Nature       Date:  2021-05-12       Impact factor: 69.504

9.  Covariation of the Fecal Microbiome with Diet in Nonpasserine Birds.

Authors:  Kangpeng Xiao; Yutan Fan; Zhipeng Zhang; Xuejuan Shen; Xiaobing Li; Xianghui Liang; Ran Bi; Yajiang Wu; Junqiong Zhai; Junwei Dai; David M Irwin; Wu Chen; Yongyi Shen
Journal:  mSphere       Date:  2021-05-12       Impact factor: 4.389

Review 10.  Factors Affecting Gut Microbiome in Daily Diet.

Authors:  Qi Su; Qin Liu
Journal:  Front Nutr       Date:  2021-05-10
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