Literature DB >> 30117314

Full gene HLA class I sequences of 79 novel and 519 mostly uncommon alleles from a large United States registry population.

Ana Lazaro1, Lihua Hou1, Bin Tu1, Carly Masaberg1, Elizabeth Enriquez1, Jennifer Gerfen1, Kanthi Kariyawasam1, Misti Persaud1, Xihan Qin1, Dannah Simbulan1, Yi Xiao1, Lisa Xun1, Ruyan Yang1, Jennifer Ng1, Carolyn K Hurley1.   

Abstract

HLA class I assignments were obtained at single genotype, G-level resolution from 98 855 volunteers for an unrelated donor registry in the United States. In spite of the diverse ancestry of the volunteers, over 99% of the assignments at each locus are common. Within this population, 52 novel alleles differing in exons 2 and 3 are identified and characterized. Previously reported alleles with incomplete sequences in the IPD-IMGT/HLA database (n = 519) were selected for full gene sequencing and, from this sampling, another 27 novel alleles are described.
© 2018 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Entities:  

Keywords:  HLAs; hematopoietic stem cell transplantation; histocompatibility testing; polymorphism, genetic; sequence analysis, DNA

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Substances:

Year:  2018        PMID: 30117314     DOI: 10.1111/tan.13377

Source DB:  PubMed          Journal:  HLA        ISSN: 2059-2302            Impact factor:   4.513


  1 in total

1.  Comparison of sequence-specific oligonucleotide probe vs next generation sequencing for HLA-A, B, C, DRB1, DRB3/B4/B5, DQA1, DQB1, DPA1, and DPB1 typing: Toward single-pass high-resolution HLA typing in support of solid organ and hematopoietic cell transplant programs.

Authors:  Anajane G Smith; Shalini Pereira; Andrés Jaramillo; Scott T Stoll; Faisal M Khan; Noureddine Berka; Ahmed A Mostafa; Marcelo J Pando; Crystal Y Usenko; Maria P Bettinotti; Chul-Woo Pyo; Wyatt C Nelson; Amanda Willis; Medhat Askar; Daniel E Geraghty
Journal:  HLA       Date:  2019-07-15       Impact factor: 4.513

  1 in total

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