Literature DB >> 30117302

Fully coupled fluid-electro-mechanical model of the human heart for supercomputers.

Alfonso Santiago1, Jazmín Aguado-Sierra1, Miguel Zavala-Aké1, Ruben Doste-Beltran2, Samuel Gómez1, Ruth Arís1, Juan C Cajas1, Eva Casoni1, Mariano Vázquez1,3.   

Abstract

In this work, we present a fully coupled fluid-electro-mechanical model of a 50th percentile human heart. The model is implemented on Alya, the BSC multi-physics parallel code, capable of running efficiently in supercomputers. Blood in the cardiac cavities is modeled by the incompressible Navier-Stokes equations and an arbitrary Lagrangian-Eulerian (ALE) scheme. Electrophysiology is modeled with a monodomain scheme and the O'Hara-Rudy cell model. Solid mechanics is modeled with a total Lagrangian formulation for discrete strains using the Holzapfel-Ogden cardiac tissue material model. The three problems are simultaneously and bidirectionally coupled through an electromechanical feedback and a fluid-structure interaction scheme. In this paper, we present the scheme in detail and propose it as a computational cardiac workbench.
© 2018 John Wiley & Sons, Ltd.

Entities:  

Keywords:  computational biomechanics; computational electrophysiology; fluid-structure interaction; high performance computing

Mesh:

Year:  2018        PMID: 30117302     DOI: 10.1002/cnm.3140

Source DB:  PubMed          Journal:  Int J Numer Method Biomed Eng        ISSN: 2040-7939            Impact factor:   2.747


  10 in total

1.  Design and execution of a verification, validation, and uncertainty quantification plan for a numerical model of left ventricular flow after LVAD implantation.

Authors:  Alfonso Santiago; Constantine Butakoff; Beatriz Eguzkitza; Richard A Gray; Karen May-Newman; Pras Pathmanathan; Vi Vu; Mariano Vázquez
Journal:  PLoS Comput Biol       Date:  2022-06-13       Impact factor: 4.779

2.  A porous circulation model of the human brain for in silico clinical trials in ischaemic stroke.

Authors:  T I Józsa; R M Padmos; N Samuels; W K El-Bouri; A G Hoekstra; S J Payne
Journal:  Interface Focus       Date:  2020-12-11       Impact factor: 3.906

3.  Study protocol: MyoFit46-the cardiac sub-study of the MRC National Survey of Health and Development.

Authors:  Matthew Webber; Debbie Falconer; Mashael AlFarih; George Joy; Fiona Chan; Clare Davie; Lee Hamill Howes; Andrew Wong; Alicja Rapala; Anish Bhuva; Rhodri H Davies; Christopher Morton; Jazmin Aguado-Sierra; Mariano Vazquez; Xuyuan Tao; Gunther Krausz; Slobodan Tanackovic; Christoph Guger; Hui Xue; Peter Kellman; Iain Pierce; Jonathan Schott; Rebecca Hardy; Nishi Chaturvedi; Yoram Rudy; James C Moon; Pier D Lambiase; Michele Orini; Alun D Hughes; Gabriella Captur
Journal:  BMC Cardiovasc Disord       Date:  2022-04-01       Impact factor: 2.298

4.  Smeared Multiscale Finite Element Models for Mass Transport and Electrophysiology Coupled to Muscle Mechanics.

Authors:  Milos Kojic; Miljan Milosevic; Vladimir Simic; Bogdan Milicevic; Vladimir Geroski; Sara Nizzero; Arturas Ziemys; Nenad Filipovic; Mauro Ferrari
Journal:  Front Bioeng Biotechnol       Date:  2019-12-10

5.  Simulating ventricular systolic motion in a four-chamber heart model with spatially varying robin boundary conditions to model the effect of the pericardium.

Authors:  Marina Strocchi; Matthias A F Gsell; Christoph M Augustin; Orod Razeghi; Caroline H Roney; Anton J Prassl; Edward J Vigmond; Jonathan M Behar; Justin S Gould; Christopher A Rinaldi; Martin J Bishop; Gernot Plank; Steven A Niederer
Journal:  J Biomech       Date:  2020-01-21       Impact factor: 2.712

6.  Human biventricular electromechanical simulations on the progression of electrocardiographic and mechanical abnormalities in post-myocardial infarction.

Authors:  Zhinuo J Wang; Alfonso Santiago; Xin Zhou; Lei Wang; Francesca Margara; Francesc Levrero-Florencio; Arka Das; Chris Kelly; Erica Dall'Armellina; Mariano Vazquez; Blanca Rodriguez
Journal:  Europace       Date:  2021-03-04       Impact factor: 5.214

7.  In-silico human electro-mechanical ventricular modelling and simulation for drug-induced pro-arrhythmia and inotropic risk assessment.

Authors:  Francesca Margara; Zhinuo J Wang; Francesc Levrero-Florencio; Alfonso Santiago; Mariano Vázquez; Alfonso Bueno-Orovio; Blanca Rodriguez
Journal:  Prog Biophys Mol Biol       Date:  2020-07-22       Impact factor: 3.667

8.  Sequential Coupling Shows Minor Effects of Fluid Dynamics on Myocardial Deformation in a Realistic Whole-Heart Model.

Authors:  Jochen Brenneisen; Anna Daub; Tobias Gerach; Ekaterina Kovacheva; Larissa Huetter; Bettina Frohnapfel; Olaf Dössel; Axel Loewe
Journal:  Front Cardiovasc Med       Date:  2021-12-23

9.  Sensitivity analysis of a strongly-coupled human-based electromechanical cardiac model: Effect of mechanical parameters on physiologically relevant biomarkers.

Authors:  F Levrero-Florencio; F Margara; E Zacur; A Bueno-Orovio; Z J Wang; A Santiago; J Aguado-Sierra; G Houzeaux; V Grau; D Kay; M Vázquez; R Ruiz-Baier; B Rodriguez
Journal:  Comput Methods Appl Mech Eng       Date:  2020-04-01       Impact factor: 6.756

10.  Causes of altered ventricular mechanics in hypertrophic cardiomyopathy: an in-silico study.

Authors:  Ekaterina Kovacheva; Tobias Gerach; Steffen Schuler; Marco Ochs; Olaf Dössel; Axel Loewe
Journal:  Biomed Eng Online       Date:  2021-07-22       Impact factor: 2.819

  10 in total

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