Literature DB >> 30117088

Plant centromeres: genetics, epigenetics and evolution.

Ludmila Cristina Oliveira1, Giovana Augusta Torres2.   

Abstract

The centromere is a functional locus of the chromosome responsible for chromatid cohesion and segregation in cell division. Usually, the centromeres can be distinguished from the remaining chromosomal regions either in structure, as they are heterochromatic constrictions that divide the chromosome in two arms, or in molecular constitution, as they have an exclusive H3 histone variant and specific DNA sequences. Besides being essential for genetic stability of eukaryotes, centromere is particularly interesting since it plays conserved roles but show high variability on organization and DNA composition. Centromeres are usually composed by satellite repeats and retrotransposons and the sequences can differ even among closely related species. Some unusual configurations containing single copy DNA were also described, including even some transcribed genes. In this review, we discuss molecular constitution, epigenetics and different types of centromere, with emphasis on plant centromeres. We also present recent advances about evolutionary processes involved in origin and differentiation of centromeres.

Keywords:  CenH3; Centromeric DNA; New centromere; Retrotransposon; Satellite DNA

Mesh:

Substances:

Year:  2018        PMID: 30117088     DOI: 10.1007/s11033-018-4284-7

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  56 in total

Review 1.  Phylogenomics of the nucleosome.

Authors:  Harmit S Malik; Steven Henikoff
Journal:  Nat Struct Biol       Date:  2003-11

2.  Nucleosomes and centromeric DNA packaging.

Authors:  J S Pat Heslop-Harrison; Trude Schwarzacher
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-26       Impact factor: 11.205

3.  Identification of a maize neocentromere in an oat-maize addition line.

Authors:  C N Topp; R J Okagaki; J R Melo; R G Kynast; R L Phillips; R K Dawe
Journal:  Cytogenet Genome Res       Date:  2009-06-25       Impact factor: 1.636

4.  Adaptive evolution of Cid, a centromere-specific histone in Drosophila.

Authors:  H S Malik; S Henikoff
Journal:  Genetics       Date:  2001-03       Impact factor: 4.562

Review 5.  Centromeric retrotransposons and centromere function.

Authors:  Gernot G Presting
Journal:  Curr Opin Genet Dev       Date:  2018-03-27       Impact factor: 5.578

6.  High frequency of centromere inactivation resulting in stable dicentric chromosomes of maize.

Authors:  Fangpu Han; Jonathan C Lamb; James A Birchler
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-21       Impact factor: 11.205

Review 7.  The role of CENP-B and alpha-satellite DNA: de novo assembly and epigenetic maintenance of human centromeres.

Authors:  Hiroshi Masumoto; Megumi Nakano; Jun-Ichirou Ohzeki
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

8.  Stretching the rules: monocentric chromosomes with multiple centromere domains.

Authors:  Pavel Neumann; Alice Navrátilová; Elizabeth Schroeder-Reiter; Andrea Koblížková; Veronika Steinbauerová; Eva Chocholová; Petr Novák; Gerhard Wanner; Jiří Macas
Journal:  PLoS Genet       Date:  2012-06-21       Impact factor: 5.917

9.  The CHD remodeling factor Hrp1 stimulates CENP-A loading to centromeres.

Authors:  Julian Walfridsson; Pernilla Bjerling; Maria Thalen; Eung-Jae Yoo; Sang Dai Park; Karl Ekwall
Journal:  Nucleic Acids Res       Date:  2005-05-20       Impact factor: 16.971

10.  The octamer is the major form of CENP-A nucleosomes at human centromeres.

Authors:  Dan Hasson; Tanya Panchenko; Kevan J Salimian; Mishah U Salman; Nikolina Sekulic; Alicia Alonso; Peter E Warburton; Ben E Black
Journal:  Nat Struct Mol Biol       Date:  2013-05-05       Impact factor: 15.369

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  9 in total

1.  Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin.

Authors:  Sean A Montgomery; Yasuhiro Tanizawa; Bence Galik; Nan Wang; Tasuku Ito; Takako Mochizuki; Svetlana Akimcheva; John L Bowman; Valérie Cognat; Laurence Maréchal-Drouard; Heinz Ekker; Syuan-Fei Hong; Takayuki Kohchi; Shih-Shun Lin; Li-Yu Daisy Liu; Yasukazu Nakamura; Lia R Valeeva; Eugene V Shakirov; Dorothy E Shippen; Wei-Lun Wei; Masaru Yagura; Shohei Yamaoka; Katsuyuki T Yamato; Chang Liu; Frédéric Berger
Journal:  Curr Biol       Date:  2020-01-30       Impact factor: 10.834

2.  Centromere Engineering as an Emerging Tool for Haploid Plant Production: Advances and Challenges.

Authors:  Raheleh Karimi-Ashtiyani
Journal:  Methods Mol Biol       Date:  2021

Review 3.  Charting the genomic landscape of seed-free plants.

Authors:  Péter Szövényi; Andika Gunadi; Fay-Wei Li
Journal:  Nat Plants       Date:  2021-04-05       Impact factor: 15.793

4.  Diversity of the repetitive DNA fraction in Cestrum, the genus with the largest genomes within Solanaceae.

Authors:  Thaíssa Boldieri de Souza; Letícia Maria Parteka; Rafael de Assis; André Luís Laforga Vanzela
Journal:  Mol Biol Rep       Date:  2022-07-09       Impact factor: 2.742

5.  Maize centromeric chromatin scales with changes in genome size.

Authors:  Na Wang; Jianing Liu; William A Ricci; Jonathan I Gent; R Kelly Dawe
Journal:  Genetics       Date:  2021-04-15       Impact factor: 4.562

6.  Extraordinary Sequence Diversity and Promiscuity of Centromeric Satellites in the Legume Tribe Fabeae.

Authors:  Laura Ávila Robledillo; Pavel Neumann; Andrea Koblížková; Petr Novák; Iva Vrbová; Jiří Macas
Journal:  Mol Biol Evol       Date:  2020-08-01       Impact factor: 16.240

7.  Centromere-Specific Single-Copy Sequences of Secale Species.

Authors:  Zijin Pan; Jie Luo; Zongxiang Tang; Shulan Fu
Journal:  Plants (Basel)       Date:  2022-08-15

Review 8.  The epigenetic regulation of centromeres and telomeres in plants and animals.

Authors:  Magdalena Achrem; Izabela Szućko; Anna Kalinka
Journal:  Comp Cytogenet       Date:  2020-07-07       Impact factor: 1.800

9.  Comparative Repeat Profiling of Two Closely Related Conifers (Larix decidua and Larix kaempferi) Reveals High Genome Similarity With Only Few Fast-Evolving Satellite DNAs.

Authors:  Tony Heitkam; Luise Schulte; Beatrice Weber; Susan Liedtke; Sarah Breitenbach; Anja Kögler; Kristin Morgenstern; Marie Brückner; Ute Tröber; Heino Wolf; Doris Krabel; Thomas Schmidt
Journal:  Front Genet       Date:  2021-07-12       Impact factor: 4.599

  9 in total

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