| Literature DB >> 30116569 |
Ines Hauptvogel1, Wilhelm Seichter1, Edwin Weber1.
Abstract
In dimethyl 5-iodo-isophthalate, C10H9IO4, (I), the planes through the methyl carboxyl-ate moieties are tilted with respect to the benzene ring, whereas the mol-ecular framework of dimethyl 5-ethynylisophthalate, C12H10O4, (II), is perfectly planar. The crystal structure of (I) is stabilized by a three-dimensional supra-molecular network comprising C-H⋯O=C hydrogen bonds, as well as I⋯O=C inter-actions. In the crystal of (II), the mol-ecules are connected via C-Hethyn-yl⋯O=C hydrogen bonds to infinite strands. Moreover, π-π arene stacking inter-actions connect the mol-ecular chains into two-dimensional supra-molecular aggregates.Entities:
Keywords: 5-substituted dimethyl isophthalates; C—H⋯O and C—H⋯I hydrogen bonding; I⋯O=C interaction; crystal structure; π–π stacking
Year: 2018 PMID: 30116569 PMCID: PMC6073011 DOI: 10.1107/S205698901800912X
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Perspective view of the molecular structures of the title compounds, (a) (I) and (b) (II), with atom labelling. Anisotropic displacement ellipsoids are drawn at the 40% probability level.
Hydrogen-bond geometry (Å, °) for (I)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C8—H8 | 0.98 | 2.55 | 3.257 (4) | 129 |
Symmetry code: (i) .
Figure 2Packing diagram of compound (I) viewed down the a axis. Dashed lines represent hydrogen-bonding interactions.
Hydrogen-bond geometry (Å, °) for (II)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C12—H12⋯O1i | 0.94 | 2.29 | 3.223 (1) | 172 |
Symmetry code: (i) .
Figure 3Packing excerpt of compound (II) viewed down the b axis. Dashed lines represent hydrogen-bonding interactions.
Experimental details
| (I) | (II) | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C10H9IO4 | C12H10O4 |
|
| 320.07 | 218.20 |
| Crystal system, space group | Orthorhombic, | Orthorhombic, |
| Temperature (K) | 143 | 223 |
|
| 7.7483 (2), 19.3451 (6), 7.2338 (2) | 10.1206 (5), 6.6219 (4), 16.3658 (8) |
|
| 1084.29 (5) | 1096.80 (10) |
|
| 4 | 4 |
| Radiation type | Mo | Mo |
| μ (mm−1) | 2.94 | 0.10 |
| Crystal size (mm) | 0.30 × 0.22 × 0.15 | 0.54 × 0.12 × 0.10 |
| Data collection | ||
| Diffractometer | Bruker APEXII CCD area detector | Bruker APEXII CCD area detector |
| Absorption correction | Multi-scan ( | Multi-scan ( |
|
| 0.472, 0.666 | 0.948, 0.990 |
| No. of measured, independent and observed [ | 22794, 2909, 2806 | 12397, 1292, 932 |
|
| 0.026 | 0.033 |
| (sin θ/λ)max (Å−1) | 0.684 | 0.638 |
| Refinement | ||
|
| 0.015, 0.038, 1.05 | 0.039, 0.110, 1.03 |
| No. of reflections | 2909 | 1292 |
| No. of parameters | 139 | 87 |
| No. of restraints | 1 | 0 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.47, −0.44 | 0.17, −0.18 |
| Absolute structure | Flack | – |
| Absolute structure parameter | −0.004 (8) | – |
Computer programs: APEX2 and SAINT (Bruker, 2014 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2018 (Sheldrick, 2015b ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and SHELXTL (Sheldrick, 2008b ▸).
| C10H9IO4 | |
| Mo | |
| Orthorhombic, | Cell parameters from 5755 reflections |
| θ = 3.0–33.7° | |
| µ = 2.94 mm−1 | |
| Irregular, colourless | |
| 0.30 × 0.22 × 0.15 mm | |
| Bruker APEXII CCD area detector diffractometer | 2806 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Sheldrick, 2008a) | θmax = 29.1°, θmin = 1.1° |
| 22794 measured reflections | |
| 2909 independent reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max = 0.002 | |
| Δρmax = 0.47 e Å−3 | |
| 2909 reflections | Δρmin = −0.44 e Å−3 |
| 139 parameters | Absolute structure: Flack |
| 1 restraint | Absolute structure parameter: −0.004 (8) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refined as a 2-component twin. |
| I1 | 0.81504 (2) | 0.66115 (2) | 0.83115 (6) | 0.02386 (5) | |
| O1 | 0.5202 (3) | 0.54751 (11) | 0.1864 (3) | 0.0327 (5) | |
| O2 | 0.3831 (3) | 0.63417 (11) | 0.0411 (3) | 0.0260 (4) | |
| O3 | 0.4971 (3) | 0.87789 (10) | 0.2029 (3) | 0.0281 (5) | |
| O4 | 0.6557 (3) | 0.89701 (11) | 0.4576 (3) | 0.0282 (5) | |
| C1 | 0.5514 (4) | 0.66267 (12) | 0.2993 (4) | 0.0190 (8) | |
| C2 | 0.5347 (3) | 0.73272 (14) | 0.2585 (4) | 0.0198 (5) | |
| H2 | 0.479369 | 0.746965 | 0.147720 | 0.024* | |
| C3 | 0.5994 (3) | 0.78152 (14) | 0.3805 (3) | 0.0194 (5) | |
| C4 | 0.6796 (3) | 0.76086 (15) | 0.5445 (4) | 0.0206 (5) | |
| H4 | 0.723931 | 0.794439 | 0.627770 | 0.025* | |
| C5 | 0.6940 (3) | 0.69088 (15) | 0.5850 (4) | 0.0207 (5) | |
| C6 | 0.6295 (4) | 0.64128 (15) | 0.4637 (4) | 0.0209 (5) | |
| H6 | 0.638485 | 0.593502 | 0.492478 | 0.025* | |
| C7 | 0.4856 (4) | 0.60819 (14) | 0.1721 (4) | 0.0223 (5) | |
| C8 | 0.3221 (5) | 0.58545 (18) | −0.0951 (5) | 0.0330 (7) | |
| H8A | 0.418544 | 0.571014 | −0.173823 | 0.049* | |
| H8B | 0.232932 | 0.607288 | −0.171341 | 0.049* | |
| H8C | 0.273509 | 0.544937 | −0.032593 | 0.049* | |
| C9 | 0.5768 (3) | 0.85636 (11) | 0.3323 (8) | 0.0214 (4) | |
| C10 | 0.6363 (5) | 0.97101 (16) | 0.4293 (5) | 0.0338 (7) | |
| H10A | 0.688803 | 0.984036 | 0.311034 | 0.051* | |
| H10B | 0.693716 | 0.995947 | 0.529896 | 0.051* | |
| H10C | 0.513396 | 0.982919 | 0.427800 | 0.051* |
| I1 | 0.02804 (8) | 0.02336 (8) | 0.02019 (8) | −0.00006 (6) | −0.00121 (12) | 0.00381 (11) |
| O1 | 0.0500 (14) | 0.0174 (10) | 0.0308 (12) | 0.0032 (9) | −0.0060 (10) | −0.0006 (9) |
| O2 | 0.0300 (11) | 0.0187 (10) | 0.0293 (11) | 0.0017 (8) | −0.0066 (9) | −0.0048 (8) |
| O3 | 0.0347 (12) | 0.0194 (10) | 0.0301 (11) | 0.0027 (9) | −0.0082 (9) | 0.0019 (8) |
| O4 | 0.0382 (12) | 0.0165 (9) | 0.0299 (11) | −0.0011 (8) | −0.0073 (9) | −0.0004 (9) |
| C1 | 0.0216 (11) | 0.0183 (10) | 0.017 (2) | 0.0009 (9) | 0.0020 (10) | −0.0004 (9) |
| C2 | 0.0196 (12) | 0.0190 (12) | 0.0209 (11) | 0.0022 (10) | 0.0042 (10) | 0.0019 (10) |
| C3 | 0.0191 (11) | 0.0183 (11) | 0.0208 (13) | 0.0013 (9) | 0.0025 (9) | 0.0012 (8) |
| C4 | 0.0217 (13) | 0.0191 (13) | 0.0211 (12) | −0.0014 (10) | 0.0017 (10) | −0.0012 (10) |
| C5 | 0.0224 (13) | 0.0217 (13) | 0.0181 (12) | 0.0022 (10) | 0.0023 (10) | 0.0017 (10) |
| C6 | 0.0242 (13) | 0.0183 (12) | 0.0201 (12) | 0.0016 (10) | 0.0024 (11) | 0.0013 (10) |
| C7 | 0.0256 (13) | 0.0197 (12) | 0.0217 (13) | −0.0011 (10) | 0.0035 (11) | −0.0011 (10) |
| C8 | 0.0409 (19) | 0.0257 (15) | 0.0323 (15) | 0.0005 (13) | −0.0088 (13) | −0.0075 (13) |
| C9 | 0.0218 (10) | 0.0173 (9) | 0.0250 (10) | −0.0001 (8) | 0.0096 (18) | −0.002 (2) |
| C10 | 0.0453 (19) | 0.0174 (14) | 0.0387 (19) | 0.0014 (13) | −0.0064 (15) | −0.0021 (12) |
| I1—C5 | 2.093 (3) | C3—C4 | 1.398 (4) |
| O1—C7 | 1.209 (3) | C3—C9 | 1.499 (4) |
| O2—C7 | 1.335 (4) | C4—C5 | 1.390 (4) |
| O2—C8 | 1.443 (4) | C4—H4 | 0.9500 |
| O3—C9 | 1.196 (5) | C5—C6 | 1.393 (4) |
| O4—C9 | 1.347 (5) | C6—H6 | 0.9500 |
| O4—C10 | 1.454 (4) | C8—H8A | 0.9800 |
| C1—C2 | 1.393 (3) | C8—H8B | 0.9800 |
| C1—C6 | 1.398 (4) | C8—H8C | 0.9800 |
| C1—C7 | 1.489 (4) | C10—H10A | 0.9800 |
| C2—C3 | 1.386 (4) | C10—H10B | 0.9800 |
| C2—H2 | 0.9500 | C10—H10C | 0.9800 |
| C7—O2—C8 | 115.7 (2) | C1—C6—H6 | 120.4 |
| C9—O4—C10 | 115.7 (3) | O1—C7—O2 | 124.0 (3) |
| C2—C1—C6 | 120.5 (3) | O1—C7—C1 | 124.0 (3) |
| C2—C1—C7 | 121.8 (3) | O2—C7—C1 | 112.1 (2) |
| C6—C1—C7 | 117.7 (2) | O2—C8—H8A | 109.5 |
| C3—C2—C1 | 119.7 (3) | O2—C8—H8B | 109.5 |
| C3—C2—H2 | 120.2 | H8A—C8—H8B | 109.5 |
| C1—C2—H2 | 120.2 | O2—C8—H8C | 109.5 |
| C2—C3—C4 | 120.4 (3) | H8A—C8—H8C | 109.5 |
| C2—C3—C9 | 117.9 (3) | H8B—C8—H8C | 109.5 |
| C4—C3—C9 | 121.7 (3) | O3—C9—O4 | 123.9 (2) |
| C5—C4—C3 | 119.5 (3) | O3—C9—C3 | 125.3 (3) |
| C5—C4—H4 | 120.2 | O4—C9—C3 | 110.7 (3) |
| C3—C4—H4 | 120.2 | O4—C10—H10A | 109.5 |
| C4—C5—C6 | 120.6 (3) | O4—C10—H10B | 109.5 |
| C4—C5—I1 | 118.9 (2) | H10A—C10—H10B | 109.5 |
| C6—C5—I1 | 120.5 (2) | O4—C10—H10C | 109.5 |
| C5—C6—C1 | 119.2 (3) | H10A—C10—H10C | 109.5 |
| C5—C6—H6 | 120.4 | H10B—C10—H10C | 109.5 |
| C6—C1—C2—C3 | 1.3 (4) | C8—O2—C7—O1 | −4.1 (4) |
| C7—C1—C2—C3 | −179.4 (2) | C8—O2—C7—C1 | 176.3 (3) |
| C1—C2—C3—C4 | −0.6 (4) | C2—C1—C7—O1 | 168.0 (3) |
| C1—C2—C3—C9 | −179.3 (3) | C6—C1—C7—O1 | −12.7 (4) |
| C2—C3—C4—C5 | −0.1 (4) | C2—C1—C7—O2 | −12.5 (4) |
| C9—C3—C4—C5 | 178.5 (3) | C6—C1—C7—O2 | 166.8 (3) |
| C3—C4—C5—C6 | 0.1 (4) | C10—O4—C9—O3 | 1.1 (5) |
| C3—C4—C5—I1 | 179.86 (19) | C10—O4—C9—C3 | −177.5 (3) |
| C4—C5—C6—C1 | 0.7 (4) | C2—C3—C9—O3 | 5.3 (5) |
| I1—C5—C6—C1 | −179.1 (2) | C4—C3—C9—O3 | −173.3 (3) |
| C2—C1—C6—C5 | −1.3 (4) | C2—C3—C9—O4 | −176.1 (3) |
| C7—C1—C6—C5 | 179.4 (2) | C4—C3—C9—O4 | 5.3 (4) |
| H··· | ||||
| C8—H8 | 0.98 | 2.55 | 3.257 (4) | 129 |
| C12H10O4 | |
| Mo | |
| Orthorhombic, | Cell parameters from 2950 reflections |
| θ = 2.4–23.1° | |
| µ = 0.10 mm−1 | |
| Column, colourless | |
| 0.54 × 0.12 × 0.10 mm | |
| Bruker APEXII CCD area detector diffractometer | 932 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Sheldrick, 2008a) | θmax = 27.0°, θmin = 2.5° |
| 12397 measured reflections | |
| 1292 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 1292 reflections | Δρmax = 0.17 e Å−3 |
| 87 parameters | Δρmin = −0.18 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Occ. (<1) | |||||
| O1 | 1.25864 (13) | 0.2500 | 0.40733 (10) | 0.0552 (4) | |
| O2 | 1.08848 (14) | 0.2500 | 0.32081 (9) | 0.0519 (4) | |
| O3 | 1.15356 (16) | 0.2500 | 0.70802 (10) | 0.0759 (6) | |
| O4 | 0.94247 (15) | 0.2500 | 0.74402 (9) | 0.0617 (5) | |
| C1 | 0.98919 (18) | 0.2500 | 0.60451 (11) | 0.0339 (4) | |
| C2 | 1.08100 (18) | 0.2500 | 0.54143 (12) | 0.0350 (4) | |
| H2 | 1.1718 | 0.2500 | 0.5536 | 0.042* | |
| C3 | 1.03958 (18) | 0.2500 | 0.46063 (12) | 0.0339 (4) | |
| C4 | 0.90505 (19) | 0.2500 | 0.44325 (12) | 0.0361 (4) | |
| H4 | 0.8767 | 0.2500 | 0.3886 | 0.043* | |
| C5 | 0.81192 (17) | 0.2500 | 0.50582 (12) | 0.0348 (4) | |
| C6 | 0.85496 (18) | 0.2500 | 0.58682 (12) | 0.0340 (4) | |
| H6 | 0.7929 | 0.2500 | 0.6296 | 0.041* | |
| C7 | 1.0392 (2) | 0.2500 | 0.68995 (13) | 0.0428 (5) | |
| C8 | 0.9818 (3) | 0.2500 | 0.82935 (14) | 0.0791 (9) | |
| H8A | 1.0203 | 0.1202 | 0.8431 | 0.119* | 0.5 |
| H8B | 0.9050 | 0.2740 | 0.8634 | 0.119* | 0.5 |
| H8C | 1.0465 | 0.3558 | 0.8385 | 0.119* | 0.5 |
| C9 | 1.1418 | 0.2500 | 0.3949 | 0.039 | |
| C10 | 1.1813 | 0.2500 | 0.2530 | 0.067 | |
| H10A | 1.1353 | 0.2149 | 0.2030 | 0.101* | 0.5 |
| H10B | 1.2505 | 0.1519 | 0.2633 | 0.101* | 0.5 |
| H10C | 1.2202 | 0.3832 | 0.2474 | 0.101* | 0.5 |
| C11 | 0.67260 (19) | 0.2500 | 0.48649 (12) | 0.0406 (5) | |
| C12 | 0.5604 (2) | 0.2500 | 0.47022 (14) | 0.0532 (6) | |
| H12 | 0.4700 | 0.2500 | 0.4571 | 0.064* |
| O1 | 0.0293 (8) | 0.0828 (11) | 0.0536 (10) | 0.000 | 0.0049 (7) | 0.000 |
| O2 | 0.0409 (9) | 0.0783 (11) | 0.0364 (8) | 0.000 | 0.0066 (7) | 0.000 |
| O3 | 0.0329 (9) | 0.1475 (18) | 0.0473 (10) | 0.000 | −0.0079 (8) | 0.000 |
| O4 | 0.0362 (9) | 0.1153 (14) | 0.0336 (8) | 0.000 | −0.0026 (7) | 0.000 |
| C1 | 0.0294 (10) | 0.0371 (10) | 0.0352 (11) | 0.000 | −0.0006 (8) | 0.000 |
| C2 | 0.0257 (9) | 0.0385 (10) | 0.0408 (11) | 0.000 | −0.0029 (8) | 0.000 |
| C3 | 0.0295 (10) | 0.0338 (9) | 0.0385 (11) | 0.000 | 0.0023 (8) | 0.000 |
| C4 | 0.0343 (11) | 0.0404 (10) | 0.0334 (10) | 0.000 | −0.0020 (9) | 0.000 |
| C5 | 0.0275 (9) | 0.0379 (10) | 0.0389 (11) | 0.000 | −0.0002 (8) | 0.000 |
| C6 | 0.0276 (9) | 0.0398 (10) | 0.0347 (11) | 0.000 | 0.0011 (8) | 0.000 |
| C7 | 0.0299 (11) | 0.0568 (12) | 0.0416 (12) | 0.000 | −0.0013 (9) | 0.000 |
| C8 | 0.0550 (16) | 0.151 (3) | 0.0315 (13) | 0.000 | −0.0049 (12) | 0.000 |
| C9 | 0.034 | 0.043 | 0.039 | 0.000 | 0.003 | 0.000 |
| C10 | 0.063 | 0.098 | 0.041 | 0.000 | 0.018 | 0.000 |
| C11 | 0.0341 (11) | 0.0558 (12) | 0.0319 (10) | 0.000 | 0.0003 (9) | 0.000 |
| C12 | 0.0340 (12) | 0.0849 (17) | 0.0409 (13) | 0.000 | −0.0041 (10) | 0.000 |
| O1—C9 | 1.1998 (14) | C4—C5 | 1.392 (3) |
| O2—C9 | 1.3272 (15) | C4—H4 | 0.9400 |
| O2—C10 | 1.4544 (14) | C5—C6 | 1.395 (3) |
| O3—C7 | 1.195 (3) | C5—C11 | 1.445 (3) |
| O4—C7 | 1.319 (3) | C6—H6 | 0.9400 |
| O4—C8 | 1.452 (3) | C8—H8A | 0.9700 |
| C1—C2 | 1.389 (3) | C8—H8B | 0.9700 |
| C1—C6 | 1.389 (3) | C8—H8C | 0.9700 |
| C1—C7 | 1.487 (3) | C10—H10A | 0.9700 |
| C2—C3 | 1.387 (3) | C10—H10B | 0.9700 |
| C2—H2 | 0.9400 | C10—H10C | 0.9700 |
| C3—C4 | 1.391 (3) | C11—C12 | 1.166 (3) |
| C3—C9 | 1.4925 (18) | C12—H12 | 0.9400 |
| C9—O2—C10 | 115.75 (10) | O3—C7—O4 | 123.6 (2) |
| C7—O4—C8 | 116.19 (18) | O3—C7—C1 | 124.21 (19) |
| C2—C1—C6 | 119.96 (18) | O4—C7—C1 | 112.23 (17) |
| C2—C1—C7 | 118.13 (17) | O4—C8—H8A | 109.5 |
| C6—C1—C7 | 121.91 (17) | O4—C8—H8B | 109.5 |
| C3—C2—C1 | 120.42 (17) | H8A—C8—H8B | 109.5 |
| C3—C2—H2 | 119.8 | O4—C8—H8C | 109.5 |
| C1—C2—H2 | 119.8 | H8A—C8—H8C | 109.5 |
| C2—C3—C4 | 119.39 (18) | H8B—C8—H8C | 109.5 |
| C2—C3—C9 | 118.53 (15) | O1—C9—O2 | 123.76 (10) |
| C4—C3—C9 | 122.09 (16) | O1—C9—C3 | 124.12 (11) |
| C3—C4—C5 | 120.83 (18) | O2—C9—C3 | 112.12 (9) |
| C3—C4—H4 | 119.6 | O2—C10—H10A | 109.5 |
| C5—C4—H4 | 119.6 | O2—C10—H10B | 109.5 |
| C4—C5—C6 | 119.18 (17) | H10A—C10—H10B | 109.5 |
| C4—C5—C11 | 119.98 (18) | O2—C10—H10C | 109.5 |
| C6—C5—C11 | 120.84 (17) | H10A—C10—H10C | 109.5 |
| C1—C6—C5 | 120.21 (17) | H10B—C10—H10C | 109.5 |
| C1—C6—H6 | 119.9 | C12—C11—C5 | 179.5 (2) |
| C5—C6—H6 | 119.9 | C11—C12—H12 | 180.0 |
| C6—C1—C2—C3 | 0.000 (1) | C8—O4—C7—O3 | 0.000 (1) |
| C7—C1—C2—C3 | 180.000 (1) | C8—O4—C7—C1 | 180.000 (1) |
| C1—C2—C3—C4 | 0.000 (1) | C2—C1—C7—O3 | 0.000 (1) |
| C1—C2—C3—C9 | 180.000 (1) | C6—C1—C7—O3 | 180.000 (1) |
| C2—C3—C4—C5 | 0.000 (1) | C2—C1—C7—O4 | 180.000 (1) |
| C9—C3—C4—C5 | 180.000 (1) | C6—C1—C7—O4 | 0.000 (1) |
| C3—C4—C5—C6 | 0.000 (1) | C10—O2—C9—O1 | 0.000 (1) |
| C3—C4—C5—C11 | 180.000 (1) | C10—O2—C9—C3 | 180.000 (1) |
| C2—C1—C6—C5 | 0.000 (1) | C2—C3—C9—O1 | 0.000 (1) |
| C7—C1—C6—C5 | 180.000 (1) | C4—C3—C9—O1 | 180.000 (1) |
| C4—C5—C6—C1 | 0.000 (1) | C2—C3—C9—O2 | 180.000 (1) |
| C11—C5—C6—C1 | 180.000 (1) | C4—C3—C9—O2 | 0.000 (1) |
| H··· | ||||
| C12—H12···O1i | 0.94 | 2.29 | 3.223 (1) | 172 |