Literature DB >> 30114904

Large Scale Synthetic Site Saturation GPCR Libraries Reveal Novel Mutations That Alter Glucose Signaling.

David Öling1, Lina Lawenius1, William Shaw2,3, Sonya Clark4, Ross Kettleborough4, Tom Ellis2,3, Niklas Larsson1, Mark Wigglesworth5.   

Abstract

Site saturation mutagenesis (SSM) is a powerful mutagenesis strategy for protein engineering and directed evolution experiments. However, limiting factors using this method are either biased representation of variants, or limiting library size. To overcome these hurdles, we generated large scale targeted synthetic SSM libraries using massively parallel oligonucleotide synthesis and benchmarked this against an error-prone (epPCR) library. The yeast glucose activated GPCR-Gpr1 was chosen as a prototype to evolve novel glucose sensors. We demonstrate superior variant representation and several unique hits in the synthetic library compared to the PCR generated library. Application of this mutational approach further builds the possibilities of synthetic biology in tuning of a response to known ligands and in generating biosensors for novel ligands.

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Year:  2018        PMID: 30114904     DOI: 10.1021/acssynbio.8b00118

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  2 in total

1.  DeCoDe: degenerate codon design for complete protein-coding DNA libraries.

Authors:  Tyler C Shimko; Polly M Fordyce; Yaron Orenstein
Journal:  Bioinformatics       Date:  2020-06-01       Impact factor: 6.937

2.  Rapid discovery of diverse neutralizing SARS-CoV-2 antibodies from large-scale synthetic phage libraries.

Authors:  Tom Z Yuan; Pankaj Garg; Linya Wang; Jordan R Willis; Eric Kwan; Ana G Lujan Hernandez; Emily Tuscano; Emily N Sever; Erica Keane; Cinque Soto; Eric M Mucker; Mallorie E Fouch; Edgar Davidson; Benjamin J Doranz; Shweta Kailasan; M Javad Aman; Haoyang Li; Jay W Hooper; Erica Ollmann Saphire; James E Crowe; Qiang Liu; Fumiko Axelrod; Aaron K Sato
Journal:  MAbs       Date:  2022 Jan-Dec       Impact factor: 5.857

  2 in total

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