Literature DB >> 30114365

Measuring Ligand Binding Kinetics to Membrane Proteins Using Virion Nano-oscillators.

Guangzhong Ma1, Guan-Da Syu2,3,4, Xiaonan Shan1,5, Brandon Henson2, Shaopeng Wang1, Prashant J Desai2, Heng Zhu3,4, Nongjian Tao1,5.   

Abstract

Membrane proteins play vital roles in cellular signaling processes and serve as the most popular drug targets. A key task in studying cellular functions and developing drugs is to measure the binding kinetics of ligands with the membrane proteins. However, this has been a long-standing challenge because one must perform the measurement in a membrane environment to maintain the conformations and functions of the membrane proteins. Here, we report a new method to measure ligand binding kinetics to membrane proteins using self-assembled virion oscillators. Virions of human herpesvirus were used to display human G-protein-coupled receptors (GPCRs) on their viral envelopes. Each virion was then attached to a gold-coated glass surface via a flexible polymer to form an oscillator and driven into oscillation with an alternating electric field. By tracking changes in the oscillation amplitude in real-time with subnanometer precision, the binding kinetics between ligands and GPCRs was measured. We anticipate that this new label-free detection technology can be readily applied to measure small or large ligand binding to any type of membrane proteins and thus contribute to the understanding of cellular functions and screening of drugs.

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Year:  2018        PMID: 30114365      PMCID: PMC6211285          DOI: 10.1021/jacs.8b07461

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  29 in total

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Authors:  Shaopeng Wang; Xiaonan Shan; Urmez Patel; Xinping Huang; Jin Lu; Jinghong Li; Nongjian Tao
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-26       Impact factor: 11.205

2.  Determining kinetics and affinities of protein interactions using a parallel real-time label-free biosensor, the Octet.

Authors:  Yasmina Abdiche; Dan Malashock; Alanna Pinkerton; Jaume Pons
Journal:  Anal Biochem       Date:  2008-03-25       Impact factor: 3.365

Review 3.  Membrane transporters in drug development.

Authors:  Kathleen M Giacomini; Shiew-Mei Huang; Donald J Tweedie; Leslie Z Benet; Kim L R Brouwer; Xiaoyan Chu; Amber Dahlin; Raymond Evers; Volker Fischer; Kathleen M Hillgren; Keith A Hoffmaster; Toshihisa Ishikawa; Dietrich Keppler; Richard B Kim; Caroline A Lee; Mikko Niemi; Joseph W Polli; Yuichi Sugiyama; Peter W Swaan; Joseph A Ware; Stephen H Wright; Sook Wah Yee; Maciej J Zamek-Gliszczynski; Lei Zhang
Journal:  Nat Rev Drug Discov       Date:  2010-03       Impact factor: 84.694

Review 4.  Sensors and regulators of intracellular pH.

Authors:  Joseph R Casey; Sergio Grinstein; John Orlowski
Journal:  Nat Rev Mol Cell Biol       Date:  2009-12-09       Impact factor: 94.444

5.  Detection of charges and molecules with self-assembled nano-oscillators.

Authors:  Xiaonan Shan; Yimin Fang; Shaopeng Wang; Yan Guan; Hong-Yuan Chen; Nongjian Tao
Journal:  Nano Lett       Date:  2014-06-26       Impact factor: 11.189

6.  Characteristics of dynamic mass redistribution of epidermal growth factor receptor signaling in living cells measured with label-free optical biosensors.

Authors:  Ye Fang; Ann M Ferrie; Norman H Fontaine; Po Ki Yuen
Journal:  Anal Chem       Date:  2005-09-01       Impact factor: 6.986

Review 7.  Cell signaling by receptor tyrosine kinases.

Authors:  Mark A Lemmon; Joseph Schlessinger
Journal:  Cell       Date:  2010-06-25       Impact factor: 41.582

Review 8.  Lipid-protein interactions in biological membranes: a structural perspective.

Authors:  A G Lee
Journal:  Biochim Biophys Acta       Date:  2003-05-02

9.  Structural changes in hemoglobin during adsorption to solid surfaces: effects of pH, ionic strength, and ligand binding.

Authors:  F Höök; M Rodahl; B Kasemo; P Brzezinski
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-13       Impact factor: 11.205

Review 10.  A comprehensive map of molecular drug targets.

Authors:  Rita Santos; Oleg Ursu; Anna Gaulton; A Patrícia Bento; Ramesh S Donadi; Cristian G Bologa; Anneli Karlsson; Bissan Al-Lazikani; Anne Hersey; Tudor I Oprea; John P Overington
Journal:  Nat Rev Drug Discov       Date:  2016-12-02       Impact factor: 84.694

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  6 in total

Review 1.  Developments and Applications of Functional Protein Microarrays.

Authors:  Guan-Da Syu; Jessica Dunn; Heng Zhu
Journal:  Mol Cell Proteomics       Date:  2020-04-17       Impact factor: 5.911

2.  Quantifying Ligand-Protein Binding Kinetics with Self-Assembled Nano-oscillators.

Authors:  Guangzhong Ma; Xiaonan Shan; Shaopeng Wang; Nongjian Tao
Journal:  Anal Chem       Date:  2019-10-17       Impact factor: 6.986

3.  Virion Display: A High-Throughput Method to Express Functional Membrane Proteins.

Authors:  Guan-Da Syu; Eric Johansen; Heng Zhu
Journal:  Curr Protoc Mol Biol       Date:  2020-09

4.  Charge-Sensitive Optical Detection of Small Molecule Binding Kinetics in Normal Ionic Strength Buffer.

Authors:  Runli Liang; Guangzhong Ma; Wenwen Jing; Yan Wang; Yunze Yang; Nongjian Tao; Shaopeng Wang
Journal:  ACS Sens       Date:  2020-09-09       Impact factor: 7.711

5.  Development and application of a high-content virion display human GPCR array.

Authors:  Guan-Da Syu; Shih-Chin Wang; Guangzhong Ma; Shuang Liu; Donna Pearce; Atish Prakash; Brandon Henson; Lien-Chun Weng; Devlina Ghosh; Pedro Ramos; Daniel Eichinger; Ignacio Pino; Xinzhong Dong; Jie Xiao; Shaopeng Wang; Nongjian Tao; Kwang Sik Kim; Prashant J Desai; Heng Zhu
Journal:  Nat Commun       Date:  2019-04-30       Impact factor: 14.919

6.  Quantification of Single-Molecule Protein Binding Kinetics in Complex Media with Prism-Coupled Plasmonic Scattering Imaging.

Authors:  Pengfei Zhang; Guangzhong Ma; Zijian Wan; Shaopeng Wang
Journal:  ACS Sens       Date:  2021-03-15       Impact factor: 7.711

  6 in total

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