Literature DB >> 3011410

Cryo-electron microscopy of vitrified SV40 minichromosomes: the liquid drop model.

J Dubochet, M Adrian, P Schultz, P Oudet.   

Abstract

The structure of SV40 minichromosomes has been studied by cryo-electron microscopy of vitrified thin layers of solution. In high-salt buffer (130 mM NaCl), freshly prepared minichromosomes are condensed into globules 30 nm or more in diameter. On the micrograph, they appear to be formed by the close packing of 10 nm granules which give rise to a 10 nm reflection in the optical diffractogram. The globules can adopt many different conformations. At high concentration, they fuse into a homogeneous 'sea' of closely packed 10 nm granules. In low-salt buffer (less than 10 mM NaCl), the globules open, first into 10 nm filaments, and then into nucleosome-strings. The 'liquid drop' model is proposed to explain the condensed structure of the minichromosome in high-salt buffer: nucleosomes stack specifically on top of one another, thus forming the 10 nm filaments. 10 nm filaments in turn, tend to aggregate laterally. Optimizing both these interactions results in the condensation of 10 nm filaments or portions thereof into a structure similar to that of a liquid. Some implications of this model for the structure of cellular chromatin are discussed.

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Year:  1986        PMID: 3011410      PMCID: PMC1166793          DOI: 10.1002/j.1460-2075.1986.tb04241.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  24 in total

1.  Electron microscopic and biochemical evidence that chromatin structure is a repeating unit.

Authors:  P Oudet; M Gross-Bellard; P Chambon
Journal:  Cell       Date:  1975-04       Impact factor: 41.582

2.  Chromatin structure: deduced from a minichromosome.

Authors:  J D Griffith
Journal:  Science       Date:  1975-03-28       Impact factor: 47.728

3.  Preparation of native chromatin and damage caused by shearing.

Authors:  M Noll; J O Thomas; R D Kornberg
Journal:  Science       Date:  1975-03-28       Impact factor: 47.728

4.  Compact form of SV40 viral minichromosome is resistant to nuclease: possible implications for chromatin structure.

Authors:  A J Varshavsky; S A Nedospasov; V V Schmatchenko; V V Bakayev; P M Chumackov; G P Georgiev
Journal:  Nucleic Acids Res       Date:  1977-10       Impact factor: 16.971

5.  Organization of the higher-order chromatin loop: specific DNA attachment sites on nuclear scaffold.

Authors:  J Mirkovitch; M E Mirault; U K Laemmli
Journal:  Cell       Date:  1984-11       Impact factor: 41.582

6.  Electron microscopy of frozen biological suspensions.

Authors:  J Lepault; F P Booy; J Dubochet
Journal:  J Microsc       Date:  1983-01       Impact factor: 1.758

7.  Cryo-electron microscopy of viruses.

Authors:  M Adrian; J Dubochet; J Lepault; A W McDowall
Journal:  Nature       Date:  1984 Mar 1-7       Impact factor: 49.962

8.  Cryo-electron microscopy of vitrified insect flight muscle.

Authors:  A W McDowall; W Hofmann; J Lepault; M Adrian; J Dubochet
Journal:  J Mol Biol       Date:  1984-09-05       Impact factor: 5.469

9.  Absence of nucleosomes in a fraction of SV40 chromatin between the origin of replication and the region coding for the late leader RNA.

Authors:  S Saragosti; G Moyne; M Yaniv
Journal:  Cell       Date:  1980-05       Impact factor: 41.582

10.  Subunit structure of simian-virus-40 minichromosome.

Authors:  M Bellard; P Oudet; J E Germond; P Chambon
Journal:  Eur J Biochem       Date:  1976-11-15
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  15 in total

1.  Cryo-electron microscopy of vitrified nerve myelin.

Authors:  K Meller
Journal:  Cell Tissue Res       Date:  1990-10       Impact factor: 5.249

2.  Reconstruction of the three-dimensional structure of simian virus 40 and visualization of the chromatin core.

Authors:  T S Baker; J Drak; M Bina
Journal:  Proc Natl Acad Sci U S A       Date:  1988-01       Impact factor: 11.205

3.  Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber.

Authors:  Maarten Kruithof; Fan-Tso Chien; Andrew Routh; Colin Logie; Daniela Rhodes; John van Noort
Journal:  Nat Struct Mol Biol       Date:  2009-04-19       Impact factor: 15.369

4.  Characterization of SV40 chromatin by mass determination on STEM.

Authors:  P Schultz; E Weiss; P Colin; E Régnier; P Oudet
Journal:  Chromosoma       Date:  1986       Impact factor: 4.316

5.  Cryo-electron microscopy of myelin treated with detergents.

Authors:  K Meller
Journal:  Cell Tissue Res       Date:  1994-06       Impact factor: 5.249

Review 6.  Ryanodine Receptor Structure and Function in Health and Disease.

Authors:  Gaetano Santulli; Daniel Lewis; Amedee des Georges; Andrew R Marks; Joachim Frank
Journal:  Subcell Biochem       Date:  2018

7.  Nuclear assembly of polyomavirus capsids in insect cells expressing the major capsid protein VP1.

Authors:  L Montross; S Watkins; R B Moreland; H Mamon; D L Caspar; R L Garcea
Journal:  J Virol       Date:  1991-09       Impact factor: 5.103

8.  Histone H1 subtypes differentially modulate chromatin condensation without preventing ATP-dependent remodeling by SWI/SNF or NURF.

Authors:  Jaime Clausell; Nicole Happel; Tracy K Hale; Detlef Doenecke; Miguel Beato
Journal:  PLoS One       Date:  2009-10-01       Impact factor: 3.240

9.  Effect of capsid confinement on the chromatin organization of the SV40 minichromosome.

Authors:  Gadiel Saper; Stanislav Kler; Roi Asor; Ariella Oppenheim; Uri Raviv; Daniel Harries
Journal:  Nucleic Acids Res       Date:  2012-12-20       Impact factor: 16.971

10.  Organization of Chromatin by Intrinsic and Regulated Phase Separation.

Authors:  Bryan A Gibson; Lynda K Doolittle; Maximillian W G Schneider; Liv E Jensen; Nathan Gamarra; Lisa Henry; Daniel W Gerlich; Sy Redding; Michael K Rosen
Journal:  Cell       Date:  2019-09-19       Impact factor: 41.582

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