Literature DB >> 30113871

iRNA-2OM: A Sequence-Based Predictor for Identifying 2'-O-Methylation Sites in Homo sapiens.

Hui Yang1, Hao Lv1, Hui Ding1, Wei Chen1,2, Hao Lin1.   

Abstract

2'-O-methylation plays an important biological role in gene expression. Owing to the explosive increase in genomic sequencing data, it is necessary to develop a method for quickly and efficiently identifying whether a sequence contains the 2'-O-methylation site. As an additional method to the experimental technique, a computational method may help to identify 2'-O-methylation sites. In this study, based on the experimental 2'-O-methylation data of Homo sapiens, we proposed a support vector machine-based model to predict 2'-O-methylation sites in H. sapiens. In this model, the RNA sequences were encoded with the optimal features obtained from feature selection. In the fivefold cross-validation test, the accuracy reached 97.95%.

Entities:  

Keywords:  2′-O-methylation; Homo sapiens; PseKNC; RNA sequence; chemical property

Mesh:

Substances:

Year:  2018        PMID: 30113871     DOI: 10.1089/cmb.2018.0004

Source DB:  PubMed          Journal:  J Comput Biol        ISSN: 1066-5277            Impact factor:   1.479


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