| Literature DB >> 30113871 |
Hui Yang1, Hao Lv1, Hui Ding1, Wei Chen1,2, Hao Lin1.
Abstract
2'-O-methylation plays an important biological role in gene expression. Owing to the explosive increase in genomic sequencing data, it is necessary to develop a method for quickly and efficiently identifying whether a sequence contains the 2'-O-methylation site. As an additional method to the experimental technique, a computational method may help to identify 2'-O-methylation sites. In this study, based on the experimental 2'-O-methylation data of Homo sapiens, we proposed a support vector machine-based model to predict 2'-O-methylation sites in H. sapiens. In this model, the RNA sequences were encoded with the optimal features obtained from feature selection. In the fivefold cross-validation test, the accuracy reached 97.95%.Entities:
Keywords: 2′-O-methylation; Homo sapiens; PseKNC; RNA sequence; chemical property
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Year: 2018 PMID: 30113871 DOI: 10.1089/cmb.2018.0004
Source DB: PubMed Journal: J Comput Biol ISSN: 1066-5277 Impact factor: 1.479