Literature DB >> 30113824

Computational Optics Enables Breast Cancer Profiling in Point-of-Care Settings.

Jouha Min1, Hyungsoon Im1,2, Matthew Allen1, Phillip J McFarland1, Ismail Degani1,3, Hojeong Yu1, Erica Normandin4, Divya Pathania1, Jaymin M Patel5, Cesar M Castro1,6, Ralph Weissleder1,2,4, Hakho Lee1,2.   

Abstract

The global burden of cancer, severe diagnostic bottlenecks in underserved regions, and underfunded health care systems are fueling the need for inexpensive, rapid, and treatment-informative diagnostics. On the basis of advances in computational optics and deep learning, we have developed a low-cost digital system, termed AIDA (artificial intelligence diffraction analysis), for breast cancer diagnosis of fine needle aspirates. Here, we show high accuracy (>90%) in (i) recognizing cells directly from diffraction patterns and (ii) classifying breast cancer types using deep-learning-based analysis of sample aspirates. The image algorithm is fast, enabling cellular analyses at high throughput (∼3 s per 1000 cells), and the unsupervised processing allows use by lower skill health care workers. AIDA can perform quantitative molecular profiling on individual cells, revealing intratumor molecular heterogeneity, and has the potential to improve cancer diagnosis and treatment. The system could be further developed for other cancers and thus find widespread use in global health.

Entities:  

Keywords:  artificial intelligence; breast cancer; deep learning; diagnostics; global health

Mesh:

Year:  2018        PMID: 30113824      PMCID: PMC6519708          DOI: 10.1021/acsnano.8b03029

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  38 in total

1.  In Silico Labeling: Predicting Fluorescent Labels in Unlabeled Images.

Authors:  Eric M Christiansen; Samuel J Yang; D Michael Ando; Ashkan Javaherian; Gaia Skibinski; Scott Lipnick; Elliot Mount; Alison O'Neil; Kevan Shah; Alicia K Lee; Piyush Goyal; William Fedus; Ryan Poplin; Andre Esteva; Marc Berndl; Lee L Rubin; Philip Nelson; Steven Finkbeiner
Journal:  Cell       Date:  2018-04-12       Impact factor: 41.582

2.  Wide-field optical detection of nanoparticles using on-chip microscopy and self-assembled nanolenses.

Authors:  Onur Mudanyali; Euan McLeod; Wei Luo; Alon Greenbaum; Ahmet F Coskun; Yves Hennequin; Cédric P Allier; Aydogan Ozcan
Journal:  Nat Photonics       Date:  2013-03-01       Impact factor: 38.771

3.  Introduction of breast cancer screening in Chernihiv Oblast in the Ukraine: report of a PATH Breast Cancer Assistance Program experience.

Authors:  Vladimir Zotov; Roman Shyyan
Journal:  Breast J       Date:  2003 May-Jun       Impact factor: 2.431

Review 4.  Oncologic Care and Pathology Resources in Africa: Survey and Recommendations.

Authors:  Ann M Nelson; Danny A Milner; Timothy R Rebbeck; Yawale Iliyasu
Journal:  J Clin Oncol       Date:  2015-11-17       Impact factor: 44.544

5.  A modified ROC analysis for the selection of cut-off values and the definition of intermediate results of serodiagnostic tests.

Authors:  M Greiner; D Sohr; P Göbel
Journal:  J Immunol Methods       Date:  1995-09-11       Impact factor: 2.303

Review 6.  A systematic assessment of benefits and risks to guide breast cancer screening decisions.

Authors:  Lydia E Pace; Nancy L Keating
Journal:  JAMA       Date:  2014-04-02       Impact factor: 56.272

7.  Wide-field, high-resolution Fourier ptychographic microscopy.

Authors:  Guoan Zheng; Roarke Horstmeyer; Changhuei Yang
Journal:  Nat Photonics       Date:  2013-09-01       Impact factor: 38.771

8.  Adaptive pixel-super-resolved lensfree in-line digital holography for wide-field on-chip microscopy.

Authors:  Jialin Zhang; Jiasong Sun; Qian Chen; Jiaji Li; Chao Zuo
Journal:  Sci Rep       Date:  2017-09-18       Impact factor: 4.379

9.  On-chip cytometry using plasmonic nanoparticle enhanced lensfree holography.

Authors:  Qingshan Wei; Euan McLeod; Hangfei Qi; Zhe Wan; Ren Sun; Aydogan Ozcan
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

10.  Sparsity-Based Pixel Super Resolution for Lens-Free Digital In-line Holography.

Authors:  Jun Song; Christine Leon Swisher; Hyungsoon Im; Sangmoo Jeong; Divya Pathania; Yoshiko Iwamoto; Misha Pivovarov; Ralph Weissleder; Hakho Lee
Journal:  Sci Rep       Date:  2016-04-21       Impact factor: 4.379

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  8 in total

Review 1.  Multiplexed imaging in oncology.

Authors:  Chrysafis Andreou; Ralph Weissleder; Moritz F Kircher
Journal:  Nat Biomed Eng       Date:  2022-05-27       Impact factor: 25.671

2.  Integrated Analytical System for Clinical Single-Cell Analysis.

Authors:  Hannah M Peterson; Lip Ket Chin; Yoshi Iwamoto; Juhyun Oh; Jonathan C T Carlson; Hakho Lee; Hyungsoon Im; Ralph Weissleder
Journal:  Adv Sci (Weinh)       Date:  2022-05-04       Impact factor: 17.521

3.  Computational Optics for Point-of-Care Breast Cancer Profiling.

Authors:  Jouha Min; Matthew Allen; Cesar M Castro; Hakho Lee; Ralph Weissleder; Hyungsoon Im
Journal:  Methods Mol Biol       Date:  2022

4.  Normalizing the Optical Signal Enables Robust Assays with Lateral Flow Biosensors.

Authors:  Jin-Ho Park; Eung-Kyu Park; Young Kwan Cho; Ik-Soo Shin; Hakho Lee
Journal:  ACS Omega       Date:  2022-05-19

Review 5.  Scalable Signature-Based Molecular Diagnostics Through On-chip Biomarker Profiling Coupled with Machine Learning.

Authors:  John Molinski; Amogha Tadimety; Alison Burklund; John X J Zhang
Journal:  Ann Biomed Eng       Date:  2020-08-20       Impact factor: 3.934

Review 6.  New technology on the horizon: Fast analytical screening technique FNA (FAST-FNA) enables rapid, multiplex biomarker analysis in head and neck cancers.

Authors:  Sara I Pai; William C Faquin; Peter M Sadow; Mikael J Pittet; Ralph Weissleder
Journal:  Cancer Cytopathol       Date:  2020-08-25       Impact factor: 5.284

7.  Point-of-care cervical cancer screening using deep learning-based microholography.

Authors:  Divya Pathania; Christian Landeros; Lucas Rohrer; Victoria D'Agostino; Seonki Hong; Ismail Degani; Maria Avila-Wallace; Misha Pivovarov; Thomas Randall; Ralph Weissleder; Hakho Lee; Hyungsoon Im; Cesar M Castro
Journal:  Theranostics       Date:  2019-11-26       Impact factor: 11.556

8.  High expression of CCNB1 driven by ncRNAs is associated with a poor prognosis and tumor immune infiltration in breast cancer.

Authors:  Hongtao Fu; Kun Li; Shui Wang; Yuming Li
Journal:  Aging (Albany NY)       Date:  2022-08-29       Impact factor: 5.955

  8 in total

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