Literature DB >> 30113038

[CTAB-PEG DNA Extraction from Fungi with High Contents of Polysaccharides].

X Huang1, N Duan1, H Xu1, T N Xie1, Y-R Xue1, C-H Liu1,2.   

Abstract

Polysaccharides influence concentration and purity of extracted DNA. Here we present rapid and efficient protocol for DNA extraction from samples rich in polysaccharides. The technique has been developed using cultures of Schizophyllum commune and involves a modification of known Cetyltrimethyl Ammonium Bromide (CTAB) protocol. To remove polysaccharides, Polyethylene Glycol (PEG) 8000 was added during DNA precipitation. Genomic DNA obtained with the CTAB-PEG method had high integrity, with average fragment size >30 kb, the concentration higher than 100 ng/μL, and the yield more than 30 μg/g. Presented technique is suitable for DNA extraction from fungi, bacteria, archaea or even mollusks with high polysaccharide content.

Entities:  

Keywords:  CTAB; Fungal genome; PEG; Schizophyllum commune; polysaccharides

Mesh:

Substances:

Year:  2018        PMID: 30113038     DOI: 10.1134/S0026898418040080

Source DB:  PubMed          Journal:  Mol Biol (Mosk)        ISSN: 0026-8984


  6 in total

1.  Analysis of Fungal Microbiomes in Edible Medicinal Morindae Officinalis Radix and Alpiniae Oxyphyllae Fructus Using DNA Metabarcoding.

Authors:  Wenjun Jiang; Xuyu Chen; Mengyue Guo; Jingsheng Yu; Meihua Yang; Xiaohui Pang
Journal:  Foods       Date:  2022-06-14

2.  Genome, genetic evolution, and environmental adaptation mechanisms of Schizophyllum commune in deep subseafloor coal-bearing sediments.

Authors:  Xuan Liu; Xin Huang; Chen Chu; Hui Xu; Long Wang; Yarong Xue; Zain Ul Arifeen Muhammad; Fumio Inagaki; Changhong Liu
Journal:  iScience       Date:  2022-05-18

3.  Optimization for the production of a polyketone 3S,4S-DMD from Panus lecomtei (Agaricomycetes) by submerged fermentation.

Authors:  Si-Xian Wang; Ping Huang; Hongwei Liu; Yucheng Dai; Xiao-Ling Wang; Gao-Qiang Liu
Journal:  Mycology       Date:  2022-02-17

4.  Rapid Detection of Candida tropicalis in Clinical Samples From Different Sources Using RPA-LFS.

Authors:  Lei Wang; Aiguo Xu; Ping Zhou; Mengdi Zhao; Chenglai Xu; Yan Wang; Kun Wang; Fang Wang; Yongchang Miao; Weiguo Zhao; Xuzhu Gao
Journal:  Front Cell Infect Microbiol       Date:  2022-07-07       Impact factor: 6.073

5.  Identification of microRNA-like RNAs from Trichoderma asperellum DQ-1 during its interaction with tomato roots using bioinformatic analysis and high-throughput sequencing.

Authors:  Weiwei Wang; Fengtao Zhang; Jia Cui; Di Chen; Zhen Liu; Jumei Hou; Rongyi Zhang; Tong Liu
Journal:  PLoS One       Date:  2021-07-22       Impact factor: 3.240

6.  Inflorescence Transcriptome Sequencing and Development of New EST-SSR Markers in Common Buckwheat (Fagopyrum esculentum).

Authors:  Yang Liu; Xiaomei Fang; Tian Tang; Yudong Wang; Yinhuan Wu; Jinyu Luo; Haotian Wu; Yingqian Wang; Jian Zhang; Renwu Ruan; Meiliang Zhou; Kaixuan Zhang; Zelin Yi
Journal:  Plants (Basel)       Date:  2022-03-10
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.