Literature DB >> 30104148

Deep Learning for Plant Stress Phenotyping: Trends and Future Perspectives.

Asheesh Kumar Singh1, Baskar Ganapathysubramanian2, Soumik Sarkar3, Arti Singh4.   

Abstract

Deep learning (DL), a subset of machine learning approaches, has emerged as a versatile tool to assimilate large amounts of heterogeneous data and provide reliable predictions of complex and uncertain phenomena. These tools are increasingly being used by the plant science community to make sense of the large datasets now regularly collected via high-throughput phenotyping and genotyping. We review recent work where DL principles have been utilized for digital image-based plant stress phenotyping. We provide a comparative assessment of DL tools against other existing techniques, with respect to decision accuracy, data size requirement, and applicability in various scenarios. Finally, we outline several avenues of research leveraging current and future DL tools in plant science.
Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

Keywords:  automation; diseases; high throughput; imaging; machine learning; phenomics; smartphone app; transfer learning

Mesh:

Year:  2018        PMID: 30104148     DOI: 10.1016/j.tplants.2018.07.004

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  65 in total

Review 1.  Species-independent analytical tools for next-generation agriculture.

Authors:  Tedrick Thomas Salim Lew; Rajani Sarojam; In-Cheol Jang; Bong Soo Park; Naweed I Naqvi; Min Hao Wong; Gajendra P Singh; Rajeev J Ram; Oded Shoseyov; Kazuki Saito; Nam-Hai Chua; Michael S Strano
Journal:  Nat Plants       Date:  2020-11-30       Impact factor: 15.793

2.  A Deep Learning-Based Approach for High-Throughput Hypocotyl Phenotyping.

Authors:  Orsolya Dobos; Peter Horvath; Ferenc Nagy; Tivadar Danka; András Viczián
Journal:  Plant Physiol       Date:  2019-10-21       Impact factor: 8.340

Review 3.  Advanced high-throughput plant phenotyping techniques for genome-wide association studies: A review.

Authors:  Qinlin Xiao; Xiulin Bai; Chu Zhang; Yong He
Journal:  J Adv Res       Date:  2021-05-12       Impact factor: 10.479

Review 4.  Identification and Characterization of Contrasting Genotypes/Cultivars for Developing Heat Tolerance in Agricultural Crops: Current Status and Prospects.

Authors:  Shikha Chaudhary; Poonam Devi; Anjali Bhardwaj; Uday Chand Jha; Kamal Dev Sharma; P V Vara Prasad; Kadambot H M Siddique; H Bindumadhava; Shiv Kumar; Harsh Nayyar
Journal:  Front Plant Sci       Date:  2020-10-22       Impact factor: 5.753

5.  Technical workflows for hyperspectral plant image assessment and processing on the greenhouse and laboratory scale.

Authors:  Stefan Paulus; Anne-Katrin Mahlein
Journal:  Gigascience       Date:  2020-08-01       Impact factor: 6.524

Review 6.  Accelerating crop genetic gains with genomic selection.

Authors:  Kai Peter Voss-Fels; Mark Cooper; Ben John Hayes
Journal:  Theor Appl Genet       Date:  2018-12-19       Impact factor: 5.699

Review 7.  Salinity stress response and 'omics' approaches for improving salinity stress tolerance in major grain legumes.

Authors:  Uday Chand Jha; Abhishek Bohra; Rintu Jha; Swarup Kumar Parida
Journal:  Plant Cell Rep       Date:  2019-01-12       Impact factor: 4.570

Review 8.  Applications of deep-learning approaches in horticultural research: a review.

Authors:  Biyun Yang; Yong Xu
Journal:  Hortic Res       Date:  2021-06-01       Impact factor: 6.793

Review 9.  'Omics' approaches in developing combined drought and heat tolerance in food crops.

Authors:  Anjali Bhardwaj; Poonam Devi; Shikha Chaudhary; Anju Rani; Uday Chand Jha; Shiv Kumar; H Bindumadhava; P V Vara Prasad; Kamal Dev Sharma; Kadambot H M Siddique; Harsh Nayyar
Journal:  Plant Cell Rep       Date:  2021-07-05       Impact factor: 4.570

10.  Application of Hyperspectral Imaging and Deep Learning for Robust Prediction of Sugar and pH Levels in Wine Grape Berries.

Authors:  Véronique Gomes; Ana Mendes-Ferreira; Pedro Melo-Pinto
Journal:  Sensors (Basel)       Date:  2021-05-15       Impact factor: 3.576

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