Literature DB >> 30098527

The challenge of synthetic biology. Synthetic Darwinism and the aperiodic crystal structure.

Nilesh B Karalkar1, Steven A Benner2.   

Abstract

'Grand Challenges' offer ways to discover flaws in existing theory without first needing to guess what those flaws are. Our grand challenge here is to reproduce the Darwinism of terran biology, but on molecular platforms different from standard DNA. Access to Darwinism distinguishes the living from the non-living state. However, theory suggests that any biopolymer able to support Darwinism must (a) be able to form Schrödinger's `aperiodic crystal', where different molecular components pack into a single crystal lattice, and (b) have a polyelectrolyte backbone. In 1953, the descriptive biology of Watson and Crick suggested DNA met Schrödinger's criertion, forming a linear crystal with geometrically similar building blocks supported on a polyelectrolye backbone. At the center of genetics were nucleobase pairs that fit into that crystal lattice by having both size complementarity and hydrogen bonding complementarity to enforce a constant geometry. This review covers experiments that show that by adhering to these two structural rules, the aperiodic crystal structure is maintained in DNA having 6 (or more) components. Further, this molecular system is shown to support Darwinism. Together with a deeper understanding of the role played in crystal formation by the poly-charged backbone and the intervening scaffolding, these results define how we might search for Darwinism, and therefore life, on Mars, Europa, Enceladus, and other watery lagoons in our Solar System.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 30098527     DOI: 10.1016/j.cbpa.2018.07.008

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  1 in total

1.  Selective and stable base pairing by alkynylated nucleosides featuring a spatially-separated recognition interface.

Authors:  Hidenori Okamura; Giang Hoang Trinh; Zhuoxin Dong; Yoshiaki Masaki; Kohji Seio; Fumi Nagatsugi
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971

  1 in total

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