Literature DB >> 3009835

Evolution of cytochrome c genes and pseudogenes.

C I Wu, W H Li, J J Shen, R C Scarpulla, K J Limbach, R Wu.   

Abstract

A statistical analysis of the nucleotide sequences of cytochrome c genes from four species of animals and two of yeast and of cytochrome c pseudogenes from rat, mouse, and human was conducted. It was estimated that animals and yeast diverged 1.2 billion years ago, that the two duplicated genes DC3 and DC4 in Drosophila diverged 520 million years ago, and that the two duplicated genes Iso-1 and Iso-2 in the yeast Saccharomyces cerevisiae diverged 200 million years ago. DC3 is expressed at a low level and has evolved 3 times faster than DC4. This observation supports the neutralist view that relaxation of functional constraints is a more likely cause of accelerated evolution following gene duplication than is advantageous mutation. All the rodent pseudogenes examined appear to be processed pseudogenes derived directly from the functional genes, and most of them apparently arose after the mouse-rat split. No event of gene conversion could be detected between any pair of the rodent pseudogenes. Our analysis suggests that the human cytochrome c gene has evolved at a rate comparable to the average rate for pseudogenes, whereas some human cytochrome c pseudogenes have evolved at an exceptionally low rate.

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Year:  1986        PMID: 3009835     DOI: 10.1007/bf02100999

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  36 in total

1.  HUMAN HEART CYTOCHROME C. CHYMOTRYPTIC PEPTIDES, TRYPTIC PEPTIDES, AND THE COMPLETE AMINO ACID SEQUENCE.

Authors:  H MATSUBARA; E L SMITH
Journal:  J Biol Chem       Date:  1963-08       Impact factor: 5.157

2.  Eukaryotes-prokaryotes divergence estimated by 5S ribosomal RNA sequences.

Authors:  M Kimura; T Ohta
Journal:  Nat New Biol       Date:  1973-06-13

Review 3.  Construction of phylogenetic trees.

Authors:  W M Fitch; E Margoliash
Journal:  Science       Date:  1967-01-20       Impact factor: 47.728

Review 4.  A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes.

Authors:  W H Li; C I Wu; C C Luo
Journal:  Mol Biol Evol       Date:  1985-03       Impact factor: 16.240

5.  Molecular drive: a cohesive mode of species evolution.

Authors:  G Dover
Journal:  Nature       Date:  1982-09-09       Impact factor: 49.962

6.  Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications.

Authors:  W H Li; C I Wu; C C Luo
Journal:  J Mol Evol       Date:  1984       Impact factor: 2.395

7.  Nucleotide sequence divergence and functional constraint in mRNA evolution.

Authors:  T Miyata; T Yasunaga; T Nishida
Journal:  Proc Natl Acad Sci U S A       Date:  1980-12       Impact factor: 11.205

8.  Pseudogenes as a paradigm of neutral evolution.

Authors:  W H Li; T Gojobori; M Nei
Journal:  Nature       Date:  1981-07-16       Impact factor: 49.962

9.  Primary structure of mouse, rat, and guinea pig cytochrome c.

Authors:  S S Carlson; G A Mross; A C Wilson; R T Mead; L D Wolin; S F Bowers; N T Foley; A O Muijsers; E Margoliash
Journal:  Biochemistry       Date:  1977-04-05       Impact factor: 3.162

10.  Evidence for higher rates of nucleotide substitution in rodents than in man.

Authors:  C I Wu; W H Li
Journal:  Proc Natl Acad Sci U S A       Date:  1985-03       Impact factor: 11.205

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  12 in total

1.  The beta-tubulin gene family of pea: primary structures, genomic organization and intron-dependent evolution of genes.

Authors:  M F Liaud; H Brinkmann; R Cerff
Journal:  Plant Mol Biol       Date:  1992-02       Impact factor: 4.076

2.  Insect muscle actins differ distinctly from invertebrate and vertebrate cytoplasmic actins.

Authors:  N Mounier; M Gouy; D Mouchiroud; J C Prudhomme
Journal:  J Mol Evol       Date:  1992-05       Impact factor: 2.395

3.  Retroviral and pseudogene insertion sites reveal the lineage of human salivary and pancreatic amylase genes from a single gene during primate evolution.

Authors:  L C Samuelson; K Wiebauer; C M Snow; M H Meisler
Journal:  Mol Cell Biol       Date:  1990-06       Impact factor: 4.272

4.  Characterization of SRp46, a novel human SR splicing factor encoded by a PR264/SC35 retropseudogene.

Authors:  J Soret; R Gattoni; C Guyon; A Sureau; M Popielarz; E Le Rouzic; S Dumon; F Apiou; B Dutrillaux; H Voss; W Ansorge; J Stévenin; B Perbal
Journal:  Mol Cell Biol       Date:  1998-08       Impact factor: 4.272

5.  RELAX: detecting relaxed selection in a phylogenetic framework.

Authors:  Joel O Wertheim; Ben Murrell; Martin D Smith; Sergei L Kosakovsky Pond; Konrad Scheffler
Journal:  Mol Biol Evol       Date:  2014-12-23       Impact factor: 16.240

6.  A group of type I keratin genes on human chromosome 17: characterization and expression.

Authors:  M Rosenberg; A RayChaudhury; T B Shows; M M Le Beau; E Fuchs
Journal:  Mol Cell Biol       Date:  1988-02       Impact factor: 4.272

7.  Strong functional GC pressure in a light-regulated maize gene encoding subunit GAPA of chloroplast glyceraldehyde-3-phosphate dehydrogenase: implications for the evolution of GAPA pseudogenes.

Authors:  F Quigley; H Brinkmann; W F Martin; R Cerff
Journal:  J Mol Evol       Date:  1989-11       Impact factor: 2.395

8.  Molecular nature of spontaneous mutations in mouse lactate dehydrogenase-A processed pseudogenes.

Authors:  K M Fukasawa; M Tanimura; I Sakai; F S Sharief; F Z Chung; S S Li
Journal:  Genetics       Date:  1987-01       Impact factor: 4.562

9.  Dollo's law and the death and resurrection of genes.

Authors:  C R Marshall; E C Raff; R A Raff
Journal:  Proc Natl Acad Sci U S A       Date:  1994-12-06       Impact factor: 11.205

10.  Independent gene evolution in the potato actin gene family demonstrated by phylogenetic procedures for resolving gene conversions and the phylogeny of angiosperm actin genes.

Authors:  G Drouin; G A Dover
Journal:  J Mol Evol       Date:  1990-08       Impact factor: 2.395

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