Literature DB >> 30093108

4-Hydroxy-tetrahydrodipicolinate reductase from Neisseria gonorrhoeae - structure and interactions with coenzymes and substrate analog.

Swanandi Pote1, Sarah E Pye1, Tyler E Sheahan1, Anna Gawlicka-Chruszcz1, Karolina A Majorek2, Maksymilian Chruszcz3.   

Abstract

Neisseria gonorrhoeae, an obligate human pathogen, is a leading cause of communicable diseases globally. Due to rapid development of drug resistance, the rate of successfully curing gonococcal infections is rapidly decreasing. Hence, research is being directed toward finding alternative drugs or drug targets to help eradicate these infections. 4-Hydroxy-tetrahydrodipicolinate reductase (DapB), an important enzyme in the meso-diaminopimelate pathway, is a promising target for the development of new antibiotics. This manuscript describes the first structure of DapB from N. gonorrhoeae determined at 1.85 Å. This enzyme uses NAD(P)H as cofactor. Details of the interactions of the enzyme with its cofactors and a substrate analog/inhibitor are discussed. A large scale bioinformatics analysis of DapBs' sequences is also described.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  2,6-pyridine dicarboxylic acid; 4-hydroxy-tetrahydrodipicolinate reductase; Dihydrodipicolinate reductase; Lysine biosynthesis; NADH; NADPH

Mesh:

Substances:

Year:  2018        PMID: 30093108      PMCID: PMC6192261          DOI: 10.1016/j.bbrc.2018.07.147

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  38 in total

1.  Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions.

Authors:  E Krissinel; K Henrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

2.  [20] Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Zbyszek Otwinowski; Wladek Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

3.  Interaction of pyridine nucleotide substrates with Escherichia coli dihydrodipicolinate reductase: thermodynamic and structural analysis of binary complexes.

Authors:  S G Reddy; G Scapin; J S Blanchard
Journal:  Biochemistry       Date:  1996-10-15       Impact factor: 3.162

4.  Catalytic mechanism and cofactor preference of dihydrodipicolinate reductase from methicillin-resistant Staphylococcus aureus.

Authors:  Sudhir R Dommaraju; Con Dogovski; Peter E Czabotar; Lilian Hor; Brian J Smith; Matthew A Perugini
Journal:  Arch Biochem Biophys       Date:  2011-06-16       Impact factor: 4.013

5.  Structure and nucleotide specificity of Staphylococcus aureus dihydrodipicolinate reductase (DapB).

Authors:  Tavarekere S Girish; Vikas Navratna; B Gopal
Journal:  FEBS Lett       Date:  2011-07-26       Impact factor: 4.124

Review 6.  The molecular mechanisms used by Neisseria gonorrhoeae to initiate infection differ between men and women.

Authors:  Jennifer L Edwards; Michael A Apicella
Journal:  Clin Microbiol Rev       Date:  2004-10       Impact factor: 26.132

7.  The structure of dihydrodipicolinate reductase (DapB) from Mycobacterium tuberculosis in three crystal forms.

Authors:  Robert Janowski; Georgia Kefala; Manfred S Weiss
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

8.  REFMAC5 for the refinement of macromolecular crystal structures.

Authors:  Garib N Murshudov; Pavol Skubák; Andrey A Lebedev; Navraj S Pannu; Roberto A Steiner; Robert A Nicholls; Martyn D Winn; Fei Long; Alexei A Vagin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

9.  Crystal structure of dihydrodipicolinate reductase (PaDHDPR) from Paenisporosarcina sp. TG-14: structural basis for NADPH preference as a cofactor.

Authors:  Chang Woo Lee; Sun-Ha Park; Sung Gu Lee; Hyun Ho Park; Hak Jun Kim; HaJeung Park; Hyun Park; Jun Hyuck Lee
Journal:  Sci Rep       Date:  2018-05-21       Impact factor: 4.379

10.  Impact of an N-terminal Polyhistidine Tag on Protein Thermal Stability.

Authors:  William T Booth; Caleb R Schlachter; Swanandi Pote; Nikita Ussin; Nicholas J Mank; Vincent Klapper; Lesa R Offermann; Chuanbing Tang; Barry K Hurlburt; Maksymilian Chruszcz
Journal:  ACS Omega       Date:  2018-01-22
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  1 in total

1.  Comparative structural and mechanistic studies of 4-hydroxy-tetrahydrodipicolinate reductases from Mycobacterium tuberculosis and Vibrio vulnificus.

Authors:  Swanandi Pote; Sangita Kachhap; Nicholas J Mank; Leily Daneshian; Vincent Klapper; Sarah Pye; Amy K Arnette; Linda S Shimizu; Tomasz Borowski; Maksymilian Chruszcz
Journal:  Biochim Biophys Acta Gen Subj       Date:  2020-09-24       Impact factor: 3.770

  1 in total

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