Literature DB >> 30086176

Correction: Genomic evidence for genes encoding leucine-rich repeat receptors linked to resistance against the eukaryotic extra- and intracellular Brassica napus pathogens Leptosphaeria maculans and Plasmodiophora brassicae.

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Abstract

[This corrects the article DOI: 10.1371/journal.pone.0198201.].

Entities:  

Year:  2018        PMID: 30086176      PMCID: PMC6080786          DOI: 10.1371/journal.pone.0202143

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


In Table 1, the value in the row titled “All other genes vs. LRRe” and the column titled “Projection test P- value” should read as 1.9E-120. Please see the corrected Table 1 here. The publisher apologizes for this error.
Table 1

Summary of statistical tests used to determine genome-wide spatial correlations between extracellular receptor-like proteins (RLPs) and secreted peptides (SPs) versus intracellular nucleotide-binding leucine-rich repeat receptors (NLRs).

 QueryReferenceRelative Kolmogorov-Smirnov P-valueaRelative ECDF area correlationbRelative ECDF deviation area P-valueJaccard measure P–valueProjection test P–value
ClosecFarOverlapdNOverlapN
eLRR vs. NLR genese2563663.2E-060.152<0.010.430.44
NLR vs. eLRR genese3662560.862-2.2E-040.720.400.34
RLP vs. NLR genes1523661.2E-040.1410.010.440.29
NLR vs. RLP genes3661520.0070.0460.070.450.24
SP vs. NLR genes1043660.0090.167<0.010.250.21
NLR vs. SP genes3661043.8E-040.0640.020.380.14
SP vs. RLP genes1041520.0100.1290.030.120.07
RLP vs. SP genes1521048.2E-050.241<0.01 0.05 0.06 
LRR vs. ribosomal genese62211340.002-0.054<0.01<0.010.21
Ribosomal vs. LRR genese11346220.2890.0210.21<0.010.02
LRR vs. all other genese622803050.000-0.261<0.01<0.018.9E-78
All other genes vs. LRRe803056222.4E-040.009<0.01 <0.01 1.9E-120 

a P values are shown for all tests in both directions, using one dataset as a query and the other one as a reference.

b ECDF: Empirical Distribution Cumulative Function

c For the relative distance test, positive and negative relative ECDF area correlation values are labeled as close and far, respectively.

d The outcome of Jaccard and projection tests is defined as overlapping or non-overlapping (N).

e The combination of RLP and SP genes are referred to as eLRR genes. Control comparisons include those of all predicted leucine-rich repeat (LRR) genes, consisting of RLP, NLR and SP genes, to ribosomal genes or those to all other coding genes of the Brassica napus genome.

a P values are shown for all tests in both directions, using one dataset as a query and the other one as a reference. b ECDF: Empirical Distribution Cumulative Function c For the relative distance test, positive and negative relative ECDF area correlation values are labeled as close and far, respectively. d The outcome of Jaccard and projection tests is defined as overlapping or non-overlapping (N). e The combination of RLP and SP genes are referred to as eLRR genes. Control comparisons include those of all predicted leucine-rich repeat (LRR) genes, consisting of RLP, NLR and SP genes, to ribosomal genes or those to all other coding genes of the Brassica napus genome.
  1 in total

1.  Genomic evidence for genes encoding leucine-rich repeat receptors linked to resistance against the eukaryotic extra- and intracellular Brassica napus pathogens Leptosphaeria maculans and Plasmodiophora brassicae.

Authors:  Henrik U Stotz; Pascoe J Harvey; Parham Haddadi; Alla Mashanova; Andreas Kukol; Nicholas J Larkan; M Hossein Borhan; Bruce D L Fitt
Journal:  PLoS One       Date:  2018-06-01       Impact factor: 3.240

  1 in total

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