| Literature DB >> 30086176 |
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Abstract
[This corrects the article DOI: 10.1371/journal.pone.0198201.].Entities:
Year: 2018 PMID: 30086176 PMCID: PMC6080786 DOI: 10.1371/journal.pone.0202143
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Summary of statistical tests used to determine genome-wide spatial correlations between extracellular receptor-like proteins (RLPs) and secreted peptides (SPs) versus intracellular nucleotide-binding leucine-rich repeat receptors (NLRs).
| Query | Reference | Relative Kolmogorov-Smirnov | Relative ECDF area correlationb | Relative ECDF deviation area | Jaccard measure | Projection test | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Closec | Far | Overlapd | N | Overlap | N | ||||||||
| eLRR vs. NLR genese | 256 | 366 | 3.2E-06 | 0.152 | <0.01 | 0.43 | 0.44 | ||||||
| NLR vs. eLRR genese | 366 | 256 | 0.862 | -2.2E-04 | 0.72 | 0.40 | 0.34 | ||||||
| RLP vs. NLR genes | 152 | 366 | 1.2E-04 | 0.141 | 0.01 | 0.44 | 0.29 | ||||||
| NLR vs. RLP genes | 366 | 152 | 0.007 | 0.046 | 0.07 | 0.45 | 0.24 | ||||||
| SP vs. NLR genes | 104 | 366 | 0.009 | 0.167 | <0.01 | 0.25 | 0.21 | ||||||
| NLR vs. SP genes | 366 | 104 | 3.8E-04 | 0.064 | 0.02 | 0.38 | 0.14 | ||||||
| SP vs. RLP genes | 104 | 152 | 0.010 | 0.129 | 0.03 | 0.12 | 0.07 | ||||||
| RLP vs. SP genes | 152 | 104 | 8.2E-05 | 0.241 | <0.01 | 0.05 | 0.06 | ||||||
| LRR vs. ribosomal genese | 622 | 1134 | 0.002 | -0.054 | <0.01 | <0.01 | 0.21 | ||||||
| Ribosomal vs. LRR genese | 1134 | 622 | 0.289 | 0.021 | 0.21 | <0.01 | 0.02 | ||||||
| LRR vs. all other genese | 622 | 80305 | 0.000 | -0.261 | <0.01 | <0.01 | 8.9E-78 | ||||||
| All other genes vs. LRRe | 80305 | 622 | 2.4E-04 | 0.009 | <0.01 | <0.01 | 1.9E-120 | ||||||
a P values are shown for all tests in both directions, using one dataset as a query and the other one as a reference.
b ECDF: Empirical Distribution Cumulative Function
c For the relative distance test, positive and negative relative ECDF area correlation values are labeled as close and far, respectively.
d The outcome of Jaccard and projection tests is defined as overlapping or non-overlapping (N).
e The combination of RLP and SP genes are referred to as eLRR genes. Control comparisons include those of all predicted leucine-rich repeat (LRR) genes, consisting of RLP, NLR and SP genes, to ribosomal genes or those to all other coding genes of the Brassica napus genome.