Literature DB >> 30084940

A brief history of bioinformatics.

Jeff Gauthier1, Antony T Vincent2, Steve J Charette3,4, Nicolas Derome1.   

Abstract

It is easy for today's students and researchers to believe that modern bioinformatics emerged recently to assist next-generation sequencing data analysis. However, the very beginnings of bioinformatics occurred more than 50 years ago, when desktop computers were still a hypothesis and DNA could not yet be sequenced. The foundations of bioinformatics were laid in the early 1960s with the application of computational methods to protein sequence analysis (notably, de novo sequence assembly, biological sequence databases and substitution models). Later on, DNA analysis also emerged due to parallel advances in (i) molecular biology methods, which allowed easier manipulation of DNA, as well as its sequencing, and (ii) computer science, which saw the rise of increasingly miniaturized and more powerful computers, as well as novel software better suited to handle bioinformatics tasks. In the 1990s through the 2000s, major improvements in sequencing technology, along with reduced costs, gave rise to an exponential increase of data. The arrival of 'Big Data' has laid out new challenges in terms of data mining and management, calling for more expertise from computer science into the field. Coupled with an ever-increasing amount of bioinformatics tools, biological Big Data had (and continues to have) profound implications on the predictive power and reproducibility of bioinformatics results. To overcome this issue, universities are now fully integrating this discipline into the curriculum of biology students. Recent subdisciplines such as synthetic biology, systems biology and whole-cell modeling have emerged from the ever-increasing complementarity between computer science and biology.
© The Author(s) 2018. Published by Oxford University Press. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Keywords:  Big Data; bioinformatics; future of bioinformatics; genomics; origin of bioinformatics; structural bioinformatics

Year:  2019        PMID: 30084940     DOI: 10.1093/bib/bby063

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  19 in total

1.  Towards a comprehensive assessment of QSP models: what would it take?

Authors:  Ioannis P Androulakis
Journal:  J Pharmacokinet Pharmacodyn       Date:  2022-08-13       Impact factor: 2.410

2.  CDK6 is upregulated and may be a potential therapeutic target in enzalutamide-resistant castration-resistant prostate cancer.

Authors:  Xi Chen; Yechen Wu; Xinan Wang; Chengdang Xu; Licheng Wang; Jingang Jian; Denglong Wu; Gang Wu
Journal:  Eur J Med Res       Date:  2022-07-02       Impact factor: 4.981

Review 3.  Potential of Mitochondrial Ribosomal Genes as Cancer Biomarkers Demonstrated by Bioinformatics Results.

Authors:  Shunchao Bao; Xinyu Wang; Mo Li; Zhao Gao; Dongdong Zheng; Dihan Shen; Linlin Liu
Journal:  Front Oncol       Date:  2022-05-26       Impact factor: 5.738

Review 4.  Back to the Colorectal Cancer Consensus Molecular Subtype Future.

Authors:  David G Menter; Jennifer S Davis; Bradley M Broom; Michael J Overman; Jeffrey Morris; Scott Kopetz
Journal:  Curr Gastroenterol Rep       Date:  2019-01-30

5.  VEGF Family Gene Expression as Prognostic Biomarkers for Alzheimer's Disease and Primary Liver Cancer.

Authors:  Kai Xu; Chuan-Ling Wu; Zhi-Xin Wang; Hai-Jiu Wang; Feng-Jiao Yin; Wen-Deng Li; Chu-Chu Liu; Hai-Ning Fan
Journal:  Comput Math Methods Med       Date:  2021-11-20       Impact factor: 2.238

6.  Bioinformatic analysis of differentially expressed genes and pathways in idiopathic pulmonary fibrosis.

Authors:  Nana Li; Lingxiao Qiu; Cheng Zeng; Zeming Fang; Shanshan Chen; Xiangjin Song; Heng Song; Guojun Zhang
Journal:  Ann Transl Med       Date:  2021-09

7.  Ten simple rules on writing clean and reliable open-source scientific software.

Authors:  Haley Hunter-Zinck; Alexandre Fioravante de Siqueira; Váleri N Vásquez; Richard Barnes; Ciera C Martinez
Journal:  PLoS Comput Biol       Date:  2021-11-11       Impact factor: 4.475

8.  Integrated analysis of differentially expressed genes, differentially methylated genes, and natural compounds in hepatitis C virus-induced cirrhosis.

Authors:  Junxiong Cheng; Zhiwei Chen; Guoqing Zuo; Wenfu Cao
Journal:  J Int Med Res       Date:  2022-01       Impact factor: 1.671

9.  Identification of Novel MicroRNAs and Their Diagnostic and Prognostic Significance in Oral Cancer.

Authors:  Luca Falzone; Gabriella Lupo; Giusy Rita Maria La Rosa; Salvatore Crimi; Carmelina Daniela Anfuso; Rossella Salemi; Ernesto Rapisarda; Massimo Libra; Saverio Candido
Journal:  Cancers (Basel)       Date:  2019-04-30       Impact factor: 6.639

10.  Bioinformatics Analysis: The Regulatory Network of hsa_circ_0007843 and hsa_circ_0007331 in Colon Cancer.

Authors:  Zeping Han; Huafang Chen; Zhonghui Guo; Jianxia Zhu; Xingyi Xie; Yuguang Li; Jinhua He
Journal:  Biomed Res Int       Date:  2021-07-23       Impact factor: 3.411

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.