Literature DB >> 30083906

Preliminary evaluation of BioFire FilmArray® Gastrointestinal Panel for the detection of noroviruses and other enteric viruses from wastewater and shellfish.

Pradip Gyawali1, Dawn Croucher2, Joanne Hewitt2.   

Abstract

The BioFire FilmArray® Gastrointestinal Panel was evaluated for the rapid detection of adenovirus, astrovirus, norovirus, rotavirus and sapovirus from influent and effluent wastewater and shellfish. The multiplex BioFire FilmArray® Gastrointestinal Panel compared well to singleplex qPCR/RT-qPCR methods for the detection of adenovirus, astrovirus, rotavirus and sapovirus from influent and effluent wastewater samples. However, the BioFire FilmArray® Gastrointestinal Panel showed poor performance for the detection of norovirus, significantly underestimating its presence in wastewater and shellfish samples when compared with the singleplex norovirus GI and GII RT-qPCR assays. Therefore, improvement on detection efficiency for norovirus from environmental and food samples is necessary before using results from the FilmArray® Gastrointestinal Panel to assess associated public health risks.

Entities:  

Keywords:  BioFire FilmArray® Gastrointestinal Panel; Enteric viruses; Norovirus; Rapid detection

Mesh：

Substances：

Year:  2018        PMID： 30083906     DOI： 10.1007/s11356-018-2869-2

Source DB:  PubMed          Journal:  Environ Sci Pollut Res Int        ISSN： 0944-1344            Impact factor:   4.223


  24 in total

1.  Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR.

Authors:  Tsutomu Kageyama; Shigeyuki Kojima; Michiyo Shinohara; Kazue Uchida; Shuetsu Fukushi; Fuminori B Hoshino; Naokazu Takeda; Kazuhiko Katayama
Journal:  J Clin Microbiol       Date:  2003-04       Impact factor: 5.948

2.  Multicenter evaluation of the BioFire FilmArray gastrointestinal panel for etiologic diagnosis of infectious gastroenteritis.

Authors:  Sarah N Buss; Amy Leber; Kimberle Chapin; Paul D Fey; Matthew J Bankowski; Matthew K Jones; Margarita Rogatcheva; Kristen J Kanack; Kevin M Bourzac
Journal:  J Clin Microbiol       Date:  2015-01-14       Impact factor: 5.948

3.  Quantification of human astroviruses in sewage using real-time RT-PCR.

Authors:  Pierre Le Cann; Sandrine Ranarijaona; Serge Monpoeho; Françoise Le Guyader; Virginie Ferré
Journal:  Res Microbiol       Date:  2004 Jan-Feb       Impact factor: 3.992

4.  Increased detection of rotavirus using a real time reverse transcription-polymerase chain reaction (RT-PCR) assay in stool specimens from children with diarrhea.

Authors:  Xiaoli L Pang; Bonita Lee; Nasim Boroumand; Barbara Leblanc; Jutta K Preiksaitis; Charlotte C Yu Ip
Journal:  J Med Virol       Date:  2004-03       Impact factor: 2.327

5.  Effect of the Shellfish Proteinase K Digestion Method on Norovirus Capsid Integrity.

Authors:  Jérémie Langlet; Laetitia Kaas; Dawn Croucher; Joanne Hewitt
Journal:  Food Environ Virol       Date:  2018-02-07       Impact factor: 2.778

6.  Relative abundance and treatment reduction of viruses during wastewater treatment processes--identification of potential viral indicators.

Authors:  Masaaki Kitajima; Brandon C Iker; Ian L Pepper; Charles P Gerba
Journal:  Sci Total Environ       Date:  2014-05-15       Impact factor: 7.963

7.  Shedding of norovirus in symptomatic and asymptomatic infections.

Authors:  P F M Teunis; F H A Sukhrie; H Vennema; J Bogerman; M F C Beersma; M P G Koopmans
Journal:  Epidemiol Infect       Date:  2014-10-22       Impact factor: 4.434

8.  Surveillance of adenoviruses and noroviruses in European recreational waters.

Authors:  A Peter Wyn-Jones; Annalaura Carducci; Nigel Cook; Martin D'Agostino; Maurizio Divizia; Jens Fleischer; Christophe Gantzer; Andrew Gawler; Rosina Girones; Christiane Höller; Ana Maria de Roda Husman; David Kay; Iwona Kozyra; Juan López-Pila; Michele Muscillo; Maria São José Nascimento; George Papageorgiou; Saskia Rutjes; Jane Sellwood; Regine Szewzyk; Mark Wyer
Journal:  Water Res       Date:  2010-10-29       Impact factor: 11.236

Review 9.  World Health Organization Estimates of the Global and Regional Disease Burden of 11 Foodborne Parasitic Diseases, 2010: A Data Synthesis.

Authors:  Paul R Torgerson; Brecht Devleesschauwer; Nicolas Praet; Niko Speybroeck; Arve Lee Willingham; Fumiko Kasuga; Mohammad B Rokni; Xiao-Nong Zhou; Eric M Fèvre; Banchob Sripa; Neyla Gargouri; Thomas Fürst; Christine M Budke; Hélène Carabin; Martyn D Kirk; Frederick J Angulo; Arie Havelaar; Nilanthi de Silva
Journal:  PLoS Med       Date:  2015-12-03       Impact factor: 11.069

10.  World Health Organization Global Estimates and Regional Comparisons of the Burden of Foodborne Disease in 2010.

Authors:  Arie H Havelaar; Martyn D Kirk; Paul R Torgerson; Herman J Gibb; Tine Hald; Robin J Lake; Nicolas Praet; David C Bellinger; Nilanthi R de Silva; Neyla Gargouri; Niko Speybroeck; Amy Cawthorne; Colin Mathers; Claudia Stein; Frederick J Angulo; Brecht Devleesschauwer
Journal:  PLoS Med       Date:  2015-12-03       Impact factor: 11.069
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  3 in total

1.  Detection of Zoonotic Gastrointestinal Pathogens in Dairy Sheep and Goats by Using FilmArray® Multiplex-PCR Technology.

Authors:  Katerina Tsilipounidaki; Zoe Florou; Daphne T Lianou; Charalambia K Michael; Eleni I Katsarou; Anargyros Skoulakis; George C Fthenakis; Efthymia Petinaki
Journal:  Microorganisms       Date:  2022-03-25

Review 2.  Astrovirus evolution and emergence.

Authors:  Nicholas Wohlgemuth; Rebekah Honce; Stacey Schultz-Cherry
Journal:  Infect Genet Evol       Date:  2019-01-11       Impact factor: 3.342

Review 3.  Occurrence of various viruses and recent evidence of SARS-CoV-2 in wastewater systems.

Authors:  Waqar Ali; Hua Zhang; Zhenglu Wang; Chuanyu Chang; Asif Javed; Kamran Ali; Wei Du; Nabeel Khan Niazi; Kang Mao; Zhugen Yang
Journal:  J Hazard Mater       Date:  2021-02-19       Impact factor: 14.224
  3 in total

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