Literature DB >> 30082507

Biological small-angle neutron scattering: recent results and development.

Emilie Mahieu1, Frank Gabel1.   

Abstract

Small-angle neutron scattering (SANS) has increasingly been used by the structural biology community in recent years to obtain low-resolution information on solubilized biomacromolecular complexes in solution. In combination with deuterium labelling and solvent-contrast variation (H2O/D2O exchange), SANS provides unique information on individual components in large heterogeneous complexes that is perfectly complementary to the structural restraints provided by crystallography, nuclear magnetic resonance and electron microscopy. Typical systems studied include multi-protein or protein-DNA/RNA complexes and solubilized membrane proteins. The internal features of these systems are less accessible to the more broadly used small-angle X-ray scattering (SAXS) technique owing to a limited range of intra-complex and solvent electron-density variation. Here, the progress and developments of biological applications of SANS in the past decade are reviewed. The review covers scientific results from selected biological systems, including protein-protein complexes, protein-RNA/DNA complexes and membrane proteins. Moreover, an overview of recent developments in instruments, sample environment, deuterium labelling and software is presented. Finally, the perspectives for biological SANS in the context of integrated structural biology approaches are discussed.

Entities:  

Keywords:  RNA/DNA; detergent; deuteration; protein; small-angle neutron scattering

Mesh:

Substances:

Year:  2018        PMID: 30082507     DOI: 10.1107/S2059798318005016

Source DB:  PubMed          Journal:  Acta Crystallogr D Struct Biol        ISSN: 2059-7983            Impact factor:   7.652


  12 in total

Review 1.  Recent advances in RNA structurome.

Authors:  Bingbing Xu; Yanda Zhu; Changchang Cao; Hao Chen; Qiongli Jin; Guangnan Li; Junfeng Ma; Siwy Ling Yang; Jieyu Zhao; Jianghui Zhu; Yiliang Ding; Xianyang Fang; Yongfeng Jin; Chun Kit Kwok; Aiming Ren; Yue Wan; Zhiye Wang; Yuanchao Xue; Huakun Zhang; Qiangfeng Cliff Zhang; Yu Zhou
Journal:  Sci China Life Sci       Date:  2022-06-14       Impact factor: 10.372

2.  Data Collection for Dilute Protein Solutions via a Neutron Backscattering Spectrometer.

Authors:  Taiki Tominaga; Hiroshi Nakagawa; Masae Sahara; Takashi Oda; Rintaro Inoue; Masaaki Sugiyama
Journal:  Life (Basel)       Date:  2022-05-02

3.  Observing Protein Degradation by the PAN-20S Proteasome by Time-Resolved Neutron Scattering.

Authors:  Emilie Mahieu; Jacques Covès; Georg Krüger; Anne Martel; Martine Moulin; Nico Carl; Michael Härtlein; Teresa Carlomagno; Bruno Franzetti; Frank Gabel
Journal:  Biophys J       Date:  2020-06-24       Impact factor: 4.033

Review 4.  Modeling Conformationally Flexible Proteins With X-ray Scattering and Molecular Simulations.

Authors:  Kyle T Powers; Melissa S Gildenberg; M Todd Washington
Journal:  Comput Struct Biotechnol J       Date:  2019-04-22       Impact factor: 7.271

Review 5.  Zooming in on protein-RNA interactions: a multi-level workflow to identify interaction partners.

Authors:  Alessio Colantoni; Jakob Rupert; Andrea Vandelli; Gian Gaetano Tartaglia; Elsa Zacco
Journal:  Biochem Soc Trans       Date:  2020-08-28       Impact factor: 5.407

Review 6.  The mitochondrial ADP/ATP carrier exists and functions as a monomer.

Authors:  Edmund R S Kunji; Jonathan J Ruprecht
Journal:  Biochem Soc Trans       Date:  2020-08-28       Impact factor: 5.407

Review 7.  Viewing SARS-CoV-2 Nucleocapsid Protein in Terms of Molecular Flexibility.

Authors:  Tatsuhito Matsuo
Journal:  Biology (Basel)       Date:  2021-05-21

8.  Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution.

Authors:  Andreas Haahr Larsen; Yong Wang; Sandro Bottaro; Sergei Grudinin; Lise Arleth; Kresten Lindorff-Larsen
Journal:  PLoS Comput Biol       Date:  2020-04-27       Impact factor: 4.475

Review 9.  Small-Angle Scattering as a Structural Probe for Nucleic Acid Nanoparticles (NANPs) in a Dynamic Solution Environment.

Authors:  Ryan C Oliver; Lewis A Rolband; Alanna M Hutchinson-Lundy; Kirill A Afonin; Joanna K Krueger
Journal:  Nanomaterials (Basel)       Date:  2019-05-02       Impact factor: 5.076

10.  Thylakoid membrane reorganizations revealed by small-angle neutron scattering of Monstera deliciosa leaves associated with non-photochemical quenching.

Authors:  Renáta Ünnep; Suman Paul; Ottó Zsiros; László Kovács; Noémi K Székely; Gábor Steinbach; Marie-Sousai Appavou; Lionel Porcar; Alfred R Holzwarth; Győző Garab; Gergely Nagy
Journal:  Open Biol       Date:  2020-09-16       Impact factor: 6.411

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