Literature DB >> 30080299

A Revised Taxonomy of Diplonemids Including the Eupelagonemidae n. fam. and a Type Species, Eupelagonema oceanica n. gen. & sp.

Noriko Okamoto1, Ryan M R Gawryluk1, Javier Del Campo1, Jürgen F H Strassert1, Julius Lukeš2, Thomas A Richards3, Alexandra Z Worden4, Alyson E Santoro5, Patrick J Keeling1.   

Abstract

Recent surveys of marine microbial diversity have identified a previously unrecognized lineage of diplonemid protists as being among the most diverse heterotrophic eukaryotes in global oceans. Despite their monophyly (and assumed importance), they lack a formal taxonomic description, and are informally known as deep-sea pelagic diplonemids (DSPDs) or marine diplonemids. Recently, we documented morphology and molecular sequences from several DSPDs, one of which is particularly widespread and abundant in environmental sequence data. To simplify the communication of future work on this important group, here we formally propose to erect the family Eupelagonemidae to encompass this clade, as well as a formal genus and species description for the apparently most abundant phylotype, Eupelagonema oceanica, for which morphological information and single-cell amplified genome data are currently available.
© 2018 International Society of Protistologists.

Entities:  

Keywords:  Deep-sea pelagic diplonemids; euglenozoa; heterotrophic flagellate; kinetoplastids; marine diplonemids; single-cell amplified genome

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Substances:

Year:  2018        PMID: 30080299     DOI: 10.1111/jeu.12679

Source DB:  PubMed          Journal:  J Eukaryot Microbiol        ISSN: 1066-5234            Impact factor:   3.346


  6 in total

1.  Single-Cell Transcriptomics of Abedinium Reveals a New Early-Branching Dinoflagellate Lineage.

Authors:  Elizabeth C Cooney; Noriko Okamoto; Anna Cho; Elisabeth Hehenberger; Thomas A Richards; Alyson E Santoro; Alexandra Z Worden; Brian S Leander; Patrick J Keeling
Journal:  Genome Biol Evol       Date:  2020-12-06       Impact factor: 3.416

2.  Typical structure of rRNA coding genes in diplonemids points to two independent origins of the bizarre rDNA structures of euglenozoans.

Authors:  Paweł Hałakuc; Anna Karnkowska; Rafał Milanowski
Journal:  BMC Ecol Evol       Date:  2022-05-09

Review 3.  Euglenozoa: taxonomy, diversity and ecology, symbioses and viruses.

Authors:  Alexei Y Kostygov; Anna Karnkowska; Jan Votýpka; Daria Tashyreva; Kacper Maciszewski; Vyacheslav Yurchenko; Julius Lukeš
Journal:  Open Biol       Date:  2021-03-10       Impact factor: 6.411

4.  Trophic flexibility of marine diplonemids - switching from osmotrophy to bacterivory.

Authors:  Galina Prokopchuk; Tomáš Korytář; Valéria Juricová; Jovana Majstorović; Aleš Horák; Karel Šimek; Julius Lukeš
Journal:  ISME J       Date:  2022-01-18       Impact factor: 11.217

5.  Structural Comparison of Diplonemid Communities around the Izu Peninsula, Japan.

Authors:  Akinori Yabuki; Masaru Kawato; Yuriko Nagano; Shinji Tsuchida; Takao Yoshida; Yoshihiro Fujiwara
Journal:  Microbes Environ       Date:  2021       Impact factor: 2.912

6.  EukRef-excavates: seven curated SSU ribosomal RNA gene databases.

Authors:  Martin Kolisko; Olga Flegontova; Anna Karnkowska; Gordon Lax; Julia M Maritz; Tomáš Pánek; Petr Táborský; Jane M Carlton; Ivan Čepička; Aleš Horák; Julius Lukeš; Alastair G B Simpson; Vera Tai
Journal:  Database (Oxford)       Date:  2020-11-20       Impact factor: 3.451

  6 in total

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