Literature DB >> 30079126

INTEGRATING SEMI-SUPERVISED LABEL PROPAGATION AND RANDOM FORESTS FOR MULTI-ATLAS BASED HIPPOCAMPUS SEGMENTATION.

Qiang Zheng1,2,3, Yong Fan1.   

Abstract

A novel multi-atlas based image segmentation method is proposed by integrating a semi-supervised label propagation method and a supervised random forests method in a pattern recognition based label fusion framework. The semi-supervised label propagation method takes into consideration local and global image appearance of images to be segmented and segments the images by propagating reliable segmentation results obtained by the supervised random forests method. Particularly, the random forests method is used to train a regression model based on image patches of atlas images for each voxel of the images to be segmented. The regression model is used to obtain reliable segmentation results to guide the label propagation for the segmentation. The proposed method has been compared with state-of-the-art multi-atlas based image segmentation methods for segmenting the hippocampus in MR images. The experiment results have demonstrated that our method obtained superior segmentation performance.

Entities:  

Keywords:  hippocampus; label propagation; multi-atlas based image segmentation; random forest

Year:  2018        PMID: 30079126      PMCID: PMC6070300          DOI: 10.1109/ISBI.2018.8363544

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  11 in total

1.  Evaluation of atlas selection strategies for atlas-based image segmentation with application to confocal microscopy images of bee brains.

Authors:  Torsten Rohlfing; Robert Brandt; Randolf Menzel; Calvin R Maurer
Journal:  Neuroimage       Date:  2004-04       Impact factor: 6.556

2.  Patch-based segmentation using expert priors: application to hippocampus and ventricle segmentation.

Authors:  Pierrick Coupé; José V Manjón; Vladimir Fonov; Jens Pruessner; Montserrat Robles; D Louis Collins
Journal:  Neuroimage       Date:  2010-09-17       Impact factor: 6.556

3.  An Optimized PatchMatch for multi-scale and multi-feature label fusion.

Authors:  Rémi Giraud; Vinh-Thong Ta; Nicolas Papadakis; José V Manjón; D Louis Collins; Pierrick Coupé
Journal:  Neuroimage       Date:  2015-08-02       Impact factor: 6.556

4.  Local label learning (LLL) for subcortical structure segmentation: application to hippocampus segmentation.

Authors:  Yongfu Hao; Tianyao Wang; Xinqing Zhang; Yunyun Duan; Chunshui Yu; Tianzi Jiang; Yong Fan
Journal:  Hum Brain Mapp       Date:  2013-10-23       Impact factor: 5.038

5.  Metric Learning for Multi-atlas based Segmentation of Hippocampus.

Authors:  Hancan Zhu; Hewei Cheng; Xuesong Yang; Yong Fan
Journal:  Neuroinformatics       Date:  2017-01

Review 6.  Multi-atlas segmentation of biomedical images: A survey.

Authors:  Juan Eugenio Iglesias; Mert R Sabuncu
Journal:  Med Image Anal       Date:  2015-07-06       Impact factor: 8.545

7.  Training labels for hippocampal segmentation based on the EADC-ADNI harmonized hippocampal protocol.

Authors:  Marina Boccardi; Martina Bocchetta; Félix C Morency; D Louis Collins; Masami Nishikawa; Rossana Ganzola; Michel J Grothe; Dominik Wolf; Alberto Redolfi; Michela Pievani; Luigi Antelmi; Andreas Fellgiebel; Hiroshi Matsuda; Stefan Teipel; Simon Duchesne; Clifford R Jack; Giovanni B Frisoni
Journal:  Alzheimers Dement       Date:  2015-01-20       Impact factor: 21.566

8.  MUSE: MUlti-atlas region Segmentation utilizing Ensembles of registration algorithms and parameters, and locally optimal atlas selection.

Authors:  Jimit Doshi; Guray Erus; Yangming Ou; Susan M Resnick; Ruben C Gur; Raquel E Gur; Theodore D Satterthwaite; Susan Furth; Christos Davatzikos
Journal:  Neuroimage       Date:  2015-12-08       Impact factor: 6.556

9.  Subject-Specific Sparse Dictionary Learning for Atlas-Based Brain MRI Segmentation.

Authors:  Snehashis Roy; Qing He; Elizabeth Sweeney; Aaron Carass; Daniel S Reich; Jerry L Prince; Dzung L Pham
Journal:  IEEE J Biomed Health Inform       Date:  2015-09       Impact factor: 5.772

10.  Multi-Atlas Segmentation with Joint Label Fusion.

Authors:  Hongzhi Wang; Jung W Suh; Sandhitsu R Das; John B Pluta; Caryne Craige; Paul A Yushkevich
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2012-06-26       Impact factor: 6.226

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  2 in total

1.  A Combined Deep-Learning and Lattice Boltzmann Model for Segmentation of the Hippocampus in MRI.

Authors:  Yingqian Liu; Zhuangzhi Yan
Journal:  Sensors (Basel)       Date:  2020-06-28       Impact factor: 3.576

2.  Integrating Semi-supervised and Supervised Learning Methods for Label Fusion in Multi-Atlas Based Image Segmentation.

Authors:  Qiang Zheng; Yihong Wu; Yong Fan
Journal:  Front Neuroinform       Date:  2018-10-10       Impact factor: 4.081

  2 in total

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