| Literature DB >> 30076356 |
Almir Badnjevic1,2,3, Lejla Gurbeta4,5,6, Eddie Custovic7.
Abstract
Respiratory diseases such as asthma and chronic obstructive pulmonary disease (COPD), are affecting a huge percentage of the world's population with mortality rates exceeding those of lung cancer and breast cancer combined. The major challenge is the number of patients who are incorrectly diagnosed. To address this, we developed an expert diagnostic system that can differentiate among patients with asthma, COPD or a normal lung function based on measurements of lung function and information about patient's symptoms. To develop accurate classification algorithms, data from 3657 patients were used and then independently verified using data from 1650 patients collected over a period of two years. Our results demonstrate that the expert diagnostic system can correctly identify patients with asthma and COPD with sensitivity of 96.45% and specificity of 98.71%. Additionally, 98.71% of the patients with a normal lung function were correctly classified, which contributed to a 49.23% decrease in demand for conducting additional tests, therefore decreasing financial cost.Entities:
Mesh:
Year: 2018 PMID: 30076356 PMCID: PMC6076307 DOI: 10.1038/s41598-018-30116-2
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1A block diagram of the entire expert diagnostic system.
questionnaire form and significance factors for each question related to asthma and copd.
| No. | Question | Answer | Asthma (As) | COPD (C) |
|---|---|---|---|---|
| Q1 | Does the patient exceed the age of 40 years? | If answered affirmatively the patient | sf1As | sf1C |
| Q2 | Does the patient experience problems while exercising or performing low intensity activities? | If answered affirmatively the patient | sf2As | sf2C |
| Q3 | Does the patient cough at night or right after waking up? | If answered affirmatively the patient | sf3As | sf3C |
| Q4 | Does the patient suffer from an abundant presence of mucus in the throat? | If answered affirmatively the patient | sf4As | sf4C |
| Q5 | Does the patient experience high-pitched breath sounds during the morning? | If answered affirmatively the patient | sf5As | sf5C |
| Q6 | Does the patient experience high pitched breath sounds at night, or while working out, or while performing low intensity activities? | If answered affirmatively the patient | sf6As | sf6C |
| Q7 | Does the patient experience a choking sensation, while at rest? | If answered affirmatively the patient | sf7As | sf7C |
*sf for the j question and k disease Given the abovementioned parameters, the probability (pk for the kth disease) of the presence of asthma or COPD in a patient can be calculated using the following equation.
Dataset Distribution per Classes.
| Asthma | COPD | Healthy | |||
|---|---|---|---|---|---|
| Total number of samples |
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| Samples used for ANN development | 3000 (56.53%) | 1267 (50.98%) | 689 (45.51%) | 1044 (79.82%) | |
| Samples used for fuzzy classifier development | 657 (12.38%) | 359 (14.45%) | 189 (12.48%) | 109 (8.33%) | |
| Real – time testing in Pulmonary Clinic of Sarajevo | 1650 (31.09%) | 859 (34.57%) | 636 (42.01%) | 155 (11.85%) | |
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Pre-classification validation accuracy and cost analysis.
| No. of reports | True pre-classifications | False pre-classifications | % of true pre-classifications | |
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| Disease | 2735 | 2603 | 132 | 95.17 |
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| COPD | 1028 | 959 | 69 | 93.33 |
| Asthma | 1707 | 1644 | 63 | 96.31 |
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| Cost of SPIR | |||
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| False pre-classifications |
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Cost of SPIR testing for healthy patients $60 + the average price of a filter needed during pulmonary tests $1 + average costs of hourly visit to medical professional $100 roughly + additional blood gas analysis (complete panel price is about $10 per patient)
*The costs of SPIR testing for Bosnia and Herzegovina are taken as approximate values based on various pricing from public and private healthcare institutions in June, 2017.
System Performance.
| EDS output | |||||
|---|---|---|---|---|---|
| Number of reports | Disease (COPD & Asthma) | Healthy | Prevalence 90.61% | ||
| True condition | Disease (COPD & Asthma) | 1442 | 53 | True positive rate Sensitivity 96.45% | False negative rate Miss rate 3.55% |
| Healthy | 2 | 153 | False positive rate 1.29% | True negative rate Specificity 98.71% | |
| Accuracy 96.66% | Positive prediction value 99.86% | False condition rate 25.73% | Positive likelihood ratio 74.76% | ||
| False discovery rate 0.139% | Negative predictive rate 74.27% | Negative likelihood ratio 1.34% | |||
Figure 2Weight factors of input parameters to machine learning models.
Comparison Of Efficency Of Machine Learning Algorithms For Classification Of Asthma And Copd.
| Samples | Model types | |||
|---|---|---|---|---|
| Random Forests | Gradient Boosting | Logistic Regression | Artificial Neural Network | |
| Accuracy | 97.330% | 98.33% | 95.33% | 93.60% |