| Literature DB >> 30066898 |
Shoubao Gao1, Xiaohong Xu2, Yue Wang3, Wei Zhang1, Xingye Wang2.
Abstract
Long non‑coding RNAs (lncRNAs) offer great potential as cancer biomarkers. Owing to the limited sensitivity and specificity of α‑fetoprotein (AFP) for the diagnosis of hepatocellular carcinoma (HCC), the present study used an lncRNA microarray to screen aberrantly expressed lncRNAs in HCC tissues. Subsequently, the expression profile of the target lncRNAs was investigated in plasma from patients with HCC or hepatitis B virus‑positive chronic hepatitis and cirrhosis (HCH), as well as from healthy volunteers. A total of six aberrantly expressed lncRNAs were identified in HCC tissues and corresponding normal tissues, from which only small nucleolar RNA host gene 1 (SNHG1) expression in HCC tissues demonstrated a good correlation with those in plasma from HCC patients. Subsequent analysis revealed that high plasma SNHG1 expression levels were correlated with tumor size, TNM stage and AFP levels. Receiver operating characteristic analysis demonstrated that SNHG1 yields an excellent diagnostic ability to differentiate between patients with HCC and unaffected control patients, which was superior to that of AFP. The combination of SNHG1 with AFP may be able to distinguish HCC from HCH or healthy volunteers with the area under the curve values of 0.86 and 0.97, respectively. In summary, it was demonstrated that plasma SNHG1 has great potential as a sensitive and reliable biomarker for the diagnosis of HCC.Entities:
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Year: 2018 PMID: 30066898 PMCID: PMC6102699 DOI: 10.3892/mmr.2018.9336
Source DB: PubMed Journal: Mol Med Rep ISSN: 1791-2997 Impact factor: 2.952
Clinicopathological characteristics of subjects in the present study.
| Clinicopathological features | HCC (n=72) | HCH (n=50) | Control (n=50) | P-value |
|---|---|---|---|---|
| Age (years) | 51.26±7.31 | 49.23±8.06 | 50.37±7.19 | 0.341 |
| Sex (male/female) | 57/15 | 39/11 | 35/15 | 0.473 |
| Smoking | 46 | 33 | 27 | 0.408 |
| Alcoholism | 26 | 18 | 15 | 0.701 |
| ALT (U/l) | 70.12±45.72 | 79.56±63.46 | 24.52±10. 94 | <0.001 |
| AST (U/l) | 71.06±50.38 | 63.22±47.19 | 21.33±8.47 | <0.001 |
| Albumin (g/dl) | 37.80±4.66 | 38.25±6.71 | 39.72±5.14 | 0.154 |
| Total bilirubin (mg/dl) | 23.73±10.16 | 29.57±48.36 | 15.24±4.60 | 0.031 |
| Glucose (mmol/l) | 5.04±1.21 | 4.98±1.09 | 4.87±1.16 | 0.729 |
| AFP | 2,036.72±418.57 | 44.57±89.33 | 21.51±6.42 | <0.001 |
AFP, α-fetoprotein; ALT, alanine transaminase; AST, aspartate aminotransferase; HBV, hepatitis B virus; HCC, hepatocellular carcinoma; HCH, HBV-positive chronic hepatitis and cirrhosis.
Forward and reverse primer sequences for reverse transcription-quantitative polymerase chain reaction.
| Gene | Primer sequence (5′→3′) |
|---|---|
| BF896662 | F: TGCACCAGTTCAGAGCCAGAG |
| R: ACAGATGATGGTATGATGAC | |
| GSO_1539211_385 | F: GATGTTCTTGCTGTGGTGGTT |
| R: ACAGTCTCATCGGCTGATTG | |
| ASLNC12707 | F: CTCGCGAGAGACGACATTCG |
| R: GGTAGGGAATCGAGGAGAATG | |
| XLOC_002237 | F: AGCCACTGGAGAAGTGTCACC |
| R: CATTCGTTGGCCACGTCCATT | |
| XLOC_014001 | F: CTCGGCCAGCATGTCGT |
| R: ATCGCTACACGATGCATACT | |
| ASLNC12773 | F: CTTAGAACACGGTCTAACGACTT |
| R: GTTGCAACTCCTGGTCACCTGC | |
| SNHG1 | F: TAACCTGCTTGGCTCAAAGGG |
| R: CAGCCTGGAGTGAACACAGA | |
| BF899728 | F: CTCAGACTGAGAGACATATCCAGGA |
| R: GGATGTTCATCCGTCTTCCAGCAGC | |
| ASLNC16612 | F: GAAGCGTCGGGAAGTCATC |
| R: GGCTTGCACACGCACTGACA | |
| DGCR5 | F: CACGAGTGTAGTGCCCAGTT |
| R: GGTCAGGGACCTTTGTCGTT | |
| GAPDH | F: CTGGGCTACACTGAGCACC |
| R: AAGTGGTCGTTGAGGGCAATG |
DGCR5, DiGeorge syndrome critical region gene 5; SNHG1, small nucleolar RNA host gene 1.
Figure 1.lncRNA expressions in HCC tissues. (A) lncRNA expression spectrum clustering map from six paired tumor samples and adjacent normal tissues. Green and red bars indicate downregulation and upregulation, respectively. (B) Relative expression levels of 10 aberrantly expressed lncRNAs were validated by reverse transcription-quantitative polymerase chain reaction. *P<0.05 and **P<0.01. NC, negative control from the corresponding adjacent normal tissue. DGCR5, DiGeorge syndrome critical region gene 5, HCC, hepatocellular carcinoma; lncRNA, long non-coding RNA; NS, not significant; SNHG1, small nucleolar RNA host gene 1.
Top 5 upregulated and top 5 downregulated lncRNAs in hepatocellular carcinoma tissues identified by microarray analysis.
| Gene ID | Log2(FC) | P-value | Regulation |
|---|---|---|---|
| BF896662 | −2.433374357 | 0.00053002 | Down |
| GSO_1539211_385 | −2.167898147 | 0.00015589 | Down |
| ASLNC12707 | −1.975377648 | 0.00008775 | Down |
| XLOC_002237 | −1.830784055 | 0.00020238 | Down |
| XLOC_014001 | −1.707527413 | 0.00010118 | Down |
| ASLNC12773 | 3.298459185 | 0.00050628 | Up |
| SNHG1 | 2.845947285 | 0.00023835 | Up |
| BF899728 | 2.541892168 | 0.00004255 | Up |
| ASLNC16612 | 2.503652367 | 0.00040132 | Up |
| DGCR5 | 2.348980639 | 0.00185469 | Up |
DGCR5, DiGeorge syndrome critical region gene 5; FC, fold change; lncRNA, long non-coding RNA; SNHG1, small nucleolar RNA host gene 1.
Figure 2.Relative expression levels of lncRNA SNHG1 in plasma samples from patients with HCC, patients with HCH and healthy Control individuals. (A-C) Relative lncRNA expression levels were determined by reverse transcription-quantitative polymerase chain reaction for (A) SNHG1, (B) ASLNC12773 and (C) BF896662 in the three groups. (D) A positive correlation was identified between plasma and tissue SNHG1 expression by Pearson correlation analysis. r=0.6210; R2=0.3857; P<0.001. (E) Relative plasma expression levels of SNHG1 pre- and post-surgery in 72 patients with HCC. HCC, hepatocellular carcinoma; HCH, hepatitis B virus-positive chronic hepatitis and cirrhosis; lncRNA, long non-coding RNA; NS, not significant; SNHG1, small nucleolar RNA host gene 1.
Clinicopathological characteristics of the patients, divided into two groups according to the plasma lncRNA SNHG1 levels in HCC.
| Plasma SNHG1 expression | ||||
|---|---|---|---|---|
| Clinicopathological characteristics | Total (n=72) | Low (n=39) | High (n=33) | P-value |
| Age | 0.605 | |||
| <50 | 47 | 27 | 20 | |
| ≥50 | 25 | 12 | 13 | |
| Sex | 0.258 | |||
| Male | 44 | 21 | 23 | |
| Female | 28 | 18 | 10 | |
| Smoker | 0.401 | |||
| Yes | 30 | 14 | 16 | |
| No | 42 | 25 | 17 | |
| Cirrhosis | 0.109 | |||
| Yes | 33 | 14 | 19 | |
| No | 39 | 25 | 14 | |
| Tumor size (cm) | 0.047 | |||
| <5 | 32 | 22 | 10 | |
| ≥5 | 40 | 17 | 23 | |
| Tumor number | 0.722 | |||
| Single | 61 | 32 | 29 | |
| Multiple | 11 | 7 | 4 | |
| TNM stage | 0.012 | |||
| I–II | 49 | 32 | 17 | |
| III–IV | 23 | 7 | 16 | |
| AFP (µg/l) | 0.024 | |||
| <200 | 46 | 30 | 16 | |
| ≥200 | 26 | 9 | 17 | |
AFP, α-fetoprotein; HCC, hepatocellular carcinoma; lncRNA, long non-coding RNA; SNHG1, small nucleolar RNA host gene 1; TNM, tumor, node, metastasis.
Receiver operating characteristic analysis of lncRNA in HCC patients.
| Group | AUC (95%CI) | P value | Sensitivity (%) | Specificity (%) |
|---|---|---|---|---|
| SHNG1 | ||||
| HCC vs. Control | 0.92 (0.86–0.96) | <0.001 | 87.3 | 86.0 |
| HCC vs. HCH | 0.74 (0.65–0.83) | <0.001 | 70.1 | 68.2 |
| AFP | ||||
| HCC vs. Control | 0.85 (0.77–0.90) | <0.001 | 64.6 | 94.6 |
| HCC vs. HCH | 0.79 (0.71–0.86) | <0.001 | 71.6 | 74.0 |
| Combined (SHNG1 + AFP) | ||||
| HCC vs. Control | 0.97 (0.92–0.99) | <0.001 | 96.4 | 87.0 |
| HCC vs. HCH | 0.86 (0.78–0.91) | <0.001 | 73.4 | 86.1 |
AFP, α-fetoprotein; HCC, hepatocellular carcinoma; HCH, hepatitis B virus-positive chronic hepatitis and cirrhosis; lncRNA, long non-coding RNA; ROC, receiver operating characteristic; SNHG1, small nucleolar RNA host gene 1.
Figure 3.Diagnostic performance of plasma SNHG1 and AFP. (A) ROC curve analysis of plasma SNHG1 and AFP expression in differentiating patients with HCC (n=72) from healthy controls (n=50). SNHG1, AUC = 0.92 (95% CI, 0.86–0.96), cut-off value = 2.54; AFP, AUC = 0.85 (95% CI, 0.77–0.90), cut-off value = 187.88 µg/l. (B) ROC analysis of plasma SNHG1 and AFP expression in differentiating patients with HCC (n=72) from patients with HCH (n=50). SNHG1, AUC = 0.74 (95% CI, 0.65–0.83), cut-off value = 3.25; AFP, AUC = 0.79 (95% CI, 0.71–0.86), cut-off value = 268.11 µg/l. (C) ROC analysis of combination of SNHG1 and AFP differentiate patients with HCC from health Controls. (D) ROC analysis of the combination of SNHG1 and AFP differentiate patients with HCC from patients with HCH. AFP, α-fetoprotein; AUC, area under the ROC curve; CI, confidence interval; HCC, hepatocellular carcinoma; HCH, hepatitis B virus-positive chronic hepatitis and cirrhosis; lncRNA, long non-coding RNA; NS, not significant; ROC, receiver operating characteristic; SNHG1, small nucleolar RNA host gene 1.