Literature DB >> 30065371

BraCeR: B-cell-receptor reconstruction and clonality inference from single-cell RNA-seq.

Ida Lindeman1,2,3, Guy Emerton3, Lira Mamanova3, Omri Snir1,2, Krzysztof Polanski3, Shuo-Wang Qiao1,2,4, Ludvig M Sollid1,2,4, Sarah A Teichmann3,5, Michael J T Stubbington6,7.   

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Year:  2018        PMID： 30065371     DOI： 10.1038/s41592-018-0082-3

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  25 in total

Review 1.  Single-cell approaches to dissect adaptive immune responses involved in autoimmunity: the case of celiac disease.

Authors:  Ida Lindeman; Ludvig M Sollid
Journal:  Mucosal Immunol       Date:  2021-09-16       Impact factor: 7.313

2.  Benchmarking computational methods for B-cell receptor reconstruction from single-cell RNA-seq data.

Authors:  Tommaso Andreani; Linda M Slot; Samuel Gabillard; Carsten Strübing; Claus Reimertz; Veeranagouda Yaligara; Aleida M Bakker; Reza Olfati-Saber; René E M Toes; Hans U Scherer; Franck Augé; Deimantė Šimaitė
Journal:  NAR Genom Bioinform       Date:  2022-07-13

3.  A statistical, reference-free algorithm subsumes myriad problems in genome science and enables novel discovery.

Authors:  Kaitlin Chaung; Tavor Baharav; Ivan Zheludev; Julia Salzman
Journal:  bioRxiv       Date:  2022-06-27

Review 4.  Using single-cell technologies to map the human immune system - implications for nephrology.

Authors:  Benjamin J Stewart; John R Ferdinand; Menna R Clatworthy
Journal:  Nat Rev Nephrol       Date:  2019-12-12       Impact factor: 28.314

5.  Tracking the immune response with single-cell genomics.

Authors:  Kathryn E Yost; Howard Y Chang; Ansuman T Satpathy
Journal:  Vaccine       Date:  2019-12-16       Impact factor: 3.641

Review 6.  Next-generation computational tools for interrogating cancer immunity.

Authors:  Francesca Finotello; Dietmar Rieder; Hubert Hackl; Zlatko Trajanoski
Journal:  Nat Rev Genet       Date:  2019-09-12       Impact factor: 59.581

Review 7.  From bench to bedside: Single-cell analysis for cancer immunotherapy.

Authors:  Emily F Davis-Marcisak; Atul Deshpande; Genevieve L Stein-O'Brien; Won J Ho; Daniel Laheru; Elizabeth M Jaffee; Elana J Fertig; Luciane T Kagohara
Journal:  Cancer Cell       Date:  2021-07-29       Impact factor: 38.585

8.  Diverse homeostatic and immunomodulatory roles of immune cells in the developing mouse lung at single cell resolution.

Authors:  Racquel Domingo-Gonzalez; Fabio Zanini; Stephen R Quake; David N Cornfield; Cristina M Alvira; Xibing Che; Min Liu; Robert C Jones; Michael A Swift
Journal:  Elife       Date:  2020-06-02       Impact factor: 8.140

Review 9.  Methods for sequence and structural analysis of B and T cell receptor repertoires.

Authors:  Shunsuke Teraguchi; Dianita S Saputri; Mara Anais Llamas-Covarrubias; Ana Davila; Diego Diez; Sedat Aybars Nazlica; John Rozewicki; Hendra S Ismanto; Jan Wilamowski; Jiaqi Xie; Zichang Xu; Martin de Jesus Loza-Lopez; Floris J van Eerden; Songling Li; Daron M Standley
Journal:  Comput Struct Biotechnol J       Date:  2020-07-17       Impact factor: 7.271

10.  Single-cell transcriptional analysis reveals ILC-like cells in zebrafish.

Authors:  Pedro P Hernández; Paulina M Strzelecka; Emmanouil I Athanasiadis; Dominic Hall; Ana F Robalo; Catherine M Collins; Pierre Boudinot; Jean-Pierre Levraud; Ana Cvejic
Journal:  Sci Immunol       Date:  2018-11-16
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