Literature DB >> 30065107

Timing during translation matters: synonymous mutations in human pathologies influence protein folding and function.

Robert Rauscher1, Zoya Ignatova2.   

Abstract

Ribosomes translate mRNAs with non-uniform speed. Translation velocity patterns are a conserved feature of mRNA and have evolved to fine-tune protein folding, expression and function. Synonymous single-nucleotide polymorphisms (sSNPs) that alter programmed translational speed affect expression and function of the encoded protein. Synergistic advances in next-generation sequencing have led to the identification of sSNPs associated with disease penetrance. Here, we draw on studies with disease-related proteins to enhance our understanding of mechanistic contributions of sSNPs to functional alterations of the encoded protein. We emphasize the importance of identification of sSNPs along with disease-causing mutations to understand genotype-phenotype relationships.
© 2018 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Entities:  

Keywords:  co-translational folding; silent SNP; tRNA; translation; translation kinetics

Mesh:

Substances:

Year:  2018        PMID: 30065107     DOI: 10.1042/BST20170422

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  14 in total

1.  Growth-Optimized Aminoacyl-tRNA Synthetase Levels Prevent Maximal tRNA Charging.

Authors:  Darren J Parker; Jean-Benoît Lalanne; Satoshi Kimura; Grace E Johnson; Matthew K Waldor; Gene-Wei Li
Journal:  Cell Syst       Date:  2020-07-28       Impact factor: 10.304

2.  Whole-exome sequencing reveals a role of HTRA1 and EGFL8 in brain white matter hyperintensities.

Authors:  Rainer Malik; Nathalie Beaufort; Simon Frerich; Benno Gesierich; Marios K Georgakis; Kristiina Rannikmäe; Amy C Ferguson; Christof Haffner; Matthew Traylor; Michael Ehrmann; Cathie L M Sudlow; Martin Dichgans
Journal:  Brain       Date:  2021-10-22       Impact factor: 15.255

Review 3.  Chemical modifications to mRNA nucleobases impact translation elongation and termination.

Authors:  Monika K Franco; Kristin S Koutmou
Journal:  Biophys Chem       Date:  2022-02-16       Impact factor: 3.628

Review 4.  Synonymous Variants: Necessary Nuance in Our Understanding of Cancer Drivers and Treatment Outcomes.

Authors:  Nayiri M Kaissarian; Douglas Meyer; Chava Kimchi-Sarfaty
Journal:  J Natl Cancer Inst       Date:  2022-08-08       Impact factor: 11.816

Review 5.  Pathways to disease from natural variations in human cytoplasmic tRNAs.

Authors:  Jeremy T Lant; Matthew D Berg; Ilka U Heinemann; Christopher J Brandl; Patrick O'Donoghue
Journal:  J Biol Chem       Date:  2019-01-14       Impact factor: 5.157

6.  A genome-wide association meta-analysis identifies new eosinophilic esophagitis loci.

Authors:  Xiao Chang; Michael March; Frank Mentch; Kenny Nguyen; Joseph Glessner; Huiqi Qu; Yichuan Liu; Glen Furuta; Seema Aceves; Nirmala Gonsalves; Kari Nadeau; Antonella Cianferoni; Jonathan Spergel; Patrick Sleiman; Hakon Hakonarson
Journal:  J Allergy Clin Immunol       Date:  2021-09-25       Impact factor: 14.290

7.  Assessing cell-specific effects of genetic variations using tRNA microarrays.

Authors:  Christine Polte; Daniel Wedemeyer; Kathryn E Oliver; Johannes Wagner; Marcel J C Bijvelds; John Mahoney; Hugo R de Jonge; Eric J Sorscher; Zoya Ignatova
Journal:  BMC Genomics       Date:  2019-07-16       Impact factor: 3.969

Review 8.  Genetic Effects of Single Nucleotide Polymorphisms in the Goat GDF9 Gene on Prolificacy: True or False Positive?

Authors:  Xinyu Wang; Qing Yang; Sihuan Zhang; Xiaoyu Zhang; Chuanying Pan; Hong Chen; Haijing Zhu; Xianyong Lan
Journal:  Animals (Basel)       Date:  2019-10-31       Impact factor: 2.752

9.  Mistranslation Drives Alterations in Protein Levels and the Effects of a Synonymous Variant at the Fibroblast Growth Factor 21 Locus.

Authors:  Ali Bayoumi; Asmaa Elsayed; Shuanglin Han; Salvatore Petta; Leon A Adams; Rocio Aller; Anis Khan; Carmelo García-Monzón; María Teresa Arias-Loste; Luca Miele; Olivier Latchoumanin; Shafi Alenizi; Rocio Gallego-Durán; Janett Fischer; Thomas Berg; Antonio Craxì; Mayada Metwally; Liang Qiao; Christopher Liddle; Hannele Yki-Järvinen; Elisabetta Bugianesi; Manuel Romero-Gomez; Jacob George; Mohammed Eslam
Journal:  Adv Sci (Weinh)       Date:  2021-05-01       Impact factor: 16.806

10.  mRNA structure regulates protein expression through changes in functional half-life.

Authors:  David M Mauger; B Joseph Cabral; Vladimir Presnyak; Stephen V Su; David W Reid; Brooke Goodman; Kristian Link; Nikhil Khatwani; John Reynders; Melissa J Moore; Iain J McFadyen
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-11       Impact factor: 11.205

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