Literature DB >> 30063105

Characterization of a severe case of PIK3CA-related overgrowth at autopsy by droplet digital polymerase chain reaction and report of PIK3CA sequencing in 22 patients.

Andrew M Piacitelli1, Dana M Jensen2, Heather Brandling-Bennett3, Megan Mariner Gray4, Maneesh Batra4, Juliane Gust1,5, Ameet Thaker6, Catherine Paschal7,8, Karen Tsuchiya7,8, Colin C Pritchard8, Jonathan Perkins9, Ghayda M Mirzaa1,10, James T Bennett2,10.   

Abstract

PIK3CA-related overgrowth spectrum (PROS) refers to a group of disorders of segmental overgrowth of a wide variety of tissues as well as venous and lymphatic malformations. Clinical and molecular diagnosis can be challenging due to phenotypic heterogeneity and difficulties detecting low-level mosaicism using standard methods. Here, we report a patient with a severe presentation of PIK3CA-related overgrowth with analysis of 27 posthumously collected tissues by droplet digital polymerase chain reaction (PCR) at autopsy. This patient had a complicated medical course, with coagulopathy, ischemic brain injury, and sepsis resulting in multi-organ failure and death at age 2 months despite sirolimus therapy. Five of the 27 tissues analyzed possessed a mosaic PIK3CA mutation (p.E545K), with mutation levels ranging from 3 to 20% across affected tissues. We found no correlation between tissue-specific disease severity and mutation levels, likely reflecting sampling limitations. We also tested a series of 22 individuals with somatic overgrowth and/or vascular-lymphatic malformations using a targeted next generation sequencing panel and found PIK3CA mutations in nine individuals, identifying three novel PIK3CA variants. This report expands the clinical and molecular spectrum of PROS, emphasizes that different molecular methods can be complimentary in the diagnosis of these disorders, and highlights the risk of coagulopathy in a subset of patients with PIK3CA-related overgrowth.
© 2018 Wiley Periodicals, Inc.

Entities:  

Keywords:  zzm321990PIK3CA; ddPCR; mosaicism; overgrowth; vascular malformation

Mesh:

Substances:

Year:  2018        PMID: 30063105      PMCID: PMC6290925          DOI: 10.1002/ajmg.a.40487

Source DB:  PubMed          Journal:  Am J Med Genet A        ISSN: 1552-4825            Impact factor:   2.802


  14 in total

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Authors:  Marco Gymnopoulos; Marc-André Elsliger; Peter K Vogt
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-21       Impact factor: 11.205

2.  ColoSeq provides comprehensive lynch and polyposis syndrome mutational analysis using massively parallel sequencing.

Authors:  Colin C Pritchard; Christina Smith; Stephen J Salipante; Ming K Lee; Anne M Thornton; Alex S Nord; Cassandra Gulden; Sonia S Kupfer; Elizabeth M Swisher; Robin L Bennett; Akiva P Novetsky; Gail P Jarvik; Olufunmilayo I Olopade; Paul J Goodfellow; Mary-Claire King; Jonathan F Tait; Tom Walsh
Journal:  J Mol Diagn       Date:  2012-05-30       Impact factor: 5.568

3.  Characterization of a distinct syndrome that associates complex truncal overgrowth, vascular, and acral anomalies: a descriptive study of 18 cases of CLOVES syndrome.

Authors:  Ahmad I Alomari
Journal:  Clin Dysmorphol       Date:  2009-01       Impact factor: 0.816

4.  Mutations of AKT3 are associated with a wide spectrum of developmental disorders including extreme megalencephaly.

Authors:  Diana Alcantara; Andrew E Timms; Karen Gripp; Laura Baker; Kaylee Park; Sarah Collins; Chi Cheng; Fiona Stewart; Sarju G Mehta; Anand Saggar; László Sztriha; Melinda Zombor; Oana Caluseriu; Ronit Mesterman; Margot I Van Allen; Adeline Jacquinet; Sofia Ygberg; Jonathan A Bernstein; Aaron M Wenger; Harendra Guturu; Gill Bejerano; Natalia Gomez-Ospina; Anna Lehman; Enrico Alfei; Chiara Pantaleoni; Valerio Conti; Renzo Guerrini; Ute Moog; John M Graham; Robert Hevner; William B Dobyns; Mark O'Driscoll; Ghayda M Mirzaa
Journal:  Brain       Date:  2017-10-01       Impact factor: 13.501

5.  De novo germline and postzygotic mutations in AKT3, PIK3R2 and PIK3CA cause a spectrum of related megalencephaly syndromes.

Authors:  Jean-Baptiste Rivière; Ghayda M Mirzaa; Brian J O'Roak; Margaret Beddaoui; Diana Alcantara; Robert L Conway; Judith St-Onge; Jeremy A Schwartzentruber; Karen W Gripp; Sarah M Nikkel; Thea Worthylake; Christopher T Sullivan; Thomas R Ward; Hailly E Butler; Nancy A Kramer; Beate Albrecht; Christine M Armour; Linlea Armstrong; Oana Caluseriu; Cheryl Cytrynbaum; Beth A Drolet; A Micheil Innes; Julie L Lauzon; Angela E Lin; Grazia M S Mancini; Wendy S Meschino; James D Reggin; Anand K Saggar; Tally Lerman-Sagie; Gökhan Uyanik; Rosanna Weksberg; Birgit Zirn; Chandree L Beaulieu; Jacek Majewski; Dennis E Bulman; Mark O'Driscoll; Jay Shendure; John M Graham; Kym M Boycott; William B Dobyns
Journal:  Nat Genet       Date:  2012-06-24       Impact factor: 38.330

6.  High-throughput droplet digital PCR system for absolute quantitation of DNA copy number.

Authors:  Benjamin J Hindson; Kevin D Ness; Donald A Masquelier; Phillip Belgrader; Nicholas J Heredia; Anthony J Makarewicz; Isaac J Bright; Michael Y Lucero; Amy L Hiddessen; Tina C Legler; Tyler K Kitano; Michael R Hodel; Jonathan F Petersen; Paul W Wyatt; Erin R Steenblock; Pallavi H Shah; Luc J Bousse; Camille B Troup; Jeffrey C Mellen; Dean K Wittmann; Nicholas G Erndt; Thomas H Cauley; Ryan T Koehler; Austin P So; Simant Dube; Klint A Rose; Luz Montesclaros; Shenglong Wang; David P Stumbo; Shawn P Hodges; Steven Romine; Fred P Milanovich; Helen E White; John F Regan; George A Karlin-Neumann; Christopher M Hindson; Serge Saxonov; Bill W Colston
Journal:  Anal Chem       Date:  2011-10-28       Impact factor: 6.986

7.  Clinical delineation and natural history of the PIK3CA-related overgrowth spectrum.

Authors:  Kim M Keppler-Noreuil; Julie C Sapp; Marjorie J Lindhurst; Victoria E R Parker; Cathy Blumhorst; Thomas Darling; Laura L Tosi; Susan M Huson; Richard W Whitehouse; Eveliina Jakkula; Ian Grant; Meena Balasubramanian; Kate E Chandler; Jamie L Fraser; Zoran Gucev; Yanick J Crow; Leslie Manace Brennan; Robin Clark; Elizabeth A Sellars; Loren D M Pena; Vidya Krishnamurty; Andrew Shuen; Nancy Braverman; Michael L Cunningham; V Reid Sutton; Velibor Tasic; John M Graham; Joseph Geer; Alex Henderson; Robert K Semple; Leslie G Biesecker
Journal:  Am J Med Genet A       Date:  2014-04-29       Impact factor: 2.802

8.  PIK3CA-associated developmental disorders exhibit distinct classes of mutations with variable expression and tissue distribution.

Authors:  Ghayda Mirzaa; Andrew E Timms; Valerio Conti; Evan August Boyle; Katta M Girisha; Beth Martin; Martin Kircher; Carissa Olds; Jane Juusola; Sarah Collins; Kaylee Park; Melissa Carter; Ian Glass; Inge Krägeloh-Mann; David Chitayat; Aditi Shah Parikh; Rachael Bradshaw; Erin Torti; Stephen Braddock; Leah Burke; Sondhya Ghedia; Mark Stephan; Fiona Stewart; Chitra Prasad; Melanie Napier; Sulagna Saitta; Rachel Straussberg; Michael Gabbett; Bridget C O'Connor; Catherine E Keegan; Lim Jiin Yin; Angeline Hwei Meeng Lai; Nicole Martin; Margaret McKinnon; Marie-Claude Addor; Luigi Boccuto; Charles E Schwartz; Agustina Lanoel; Robert L Conway; Koenraad Devriendt; Katrina Tatton-Brown; Mary Ella Pierpont; Michael Painter; Lisa Worgan; James Reggin; Raoul Hennekam; Karen Tsuchiya; Colin C Pritchard; Mariana Aracena; Karen W Gripp; Maria Cordisco; Hilde Van Esch; Livia Garavelli; Cynthia Curry; Anne Goriely; Hulya Kayserilli; Jay Shendure; John Graham; Renzo Guerrini; William B Dobyns
Journal:  JCI Insight       Date:  2016-06-16

9.  Lymphatic and other vascular malformative/overgrowth disorders are caused by somatic mutations in PIK3CA.

Authors:  Valerie L Luks; Nolan Kamitaki; Matthew P Vivero; Wibke Uller; Rashed Rab; Judith V M G Bovée; Kristy L Rialon; Carlos J Guevara; Ahmad I Alomari; Arin K Greene; Steven J Fishman; Harry P W Kozakewich; Reid A Maclellan; John B Mulliken; Reza Rahbar; Samantha A Spencer; Cameron C Trenor; Joseph Upton; David Zurakowski; Jonathan A Perkins; Andrew Kirsh; James T Bennett; William B Dobyns; Kyle C Kurek; Matthew L Warman; Steven A McCarroll; Rudy Murillo
Journal:  J Pediatr       Date:  2015-02-11       Impact factor: 4.406

10.  An AKT3-FOXG1-reelin network underlies defective migration in human focal malformations of cortical development.

Authors:  Seung Tae Baek; Brett Copeland; Eun-Jin Yun; Seok-Kyu Kwon; Alicia Guemez-Gamboa; Ashleigh E Schaffer; Sangwoo Kim; Hoon-Chul Kang; Saera Song; Gary W Mathern; Joseph G Gleeson
Journal:  Nat Med       Date:  2015-11-02       Impact factor: 53.440

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Authors:  Jeffrey N Dudley; Celine S Hong; Marwan A Hawari; Jasmine Shwetar; Julie C Sapp; Justin Lack; Henoke Shiferaw; Jennifer J Johnston; Leslie G Biesecker
Journal:  BMC Bioinformatics       Date:  2021-04-08       Impact factor: 3.307

2.  Somatic Mosaicism of a PDGFRB Activating Variant in Aneurysms of the Intracranial, Coronary, Aortic, and Radial Artery Vascular Beds.

Authors:  Carolina A Parada; Fatima M El-Ghazali; Daphne Toglia; Jacob Ruzevick; Malia McAvoy; Samuel Emerson; Yigit Karasozen; Tina Busald; Ahmad A Nazem; Shaun M Suranowitz; Sherene Shalhub; Desiree A Marshall; Luis F Gonzalez-Cuyar; Michael O Dorschner; Manuel Ferreira
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Review 3.  A review of mechanisms of disease across PIK3CA-related disorders with vascular manifestations.

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4.  Detection of PIK3CA Gene Mutation in Head and Neck Squamous Cell Carcinoma Using Droplet Digital PCR and RT-qPCR.

Authors:  Edyta M Borkowska; Magda Barańska; Magdalena Kowalczyk; Wioletta Pietruszewska
Journal:  Biomolecules       Date:  2021-05-31

5.  Neuropathology of genetically defined malformations of cortical development-A systematic literature review.

Authors:  Stefanie Brock; Filip Cools; Anna C Jansen
Journal:  Neuropathol Appl Neurobiol       Date:  2021-02-14       Impact factor: 8.090

6.  Detailed analysis of phenotypes and genotypes in megalencephaly-capillary malformation-polymicrogyria syndrome caused by somatic mosaicism of PIK3CA mutations.

Authors:  Hyun Jin Park; Chang Ho Shin; Won Joon Yoo; Tae-Joon Cho; Man Jin Kim; Moon-Woo Seong; Sung Sup Park; Jeong Ho Lee; Nam Suk Sim; Jung Min Ko
Journal:  Orphanet J Rare Dis       Date:  2020-08-10       Impact factor: 4.123

Review 7.  Genetic approaches to metabolic bone diseases.

Authors:  Fadil M Hannan; Paul J Newey; Michael P Whyte; Rajesh V Thakker
Journal:  Br J Clin Pharmacol       Date:  2018-11-28       Impact factor: 4.335

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