Literature DB >> 30061677

Artifact-free high-density localization microscopy analysis.

Richard J Marsh1, Karin Pfisterer1, Pauline Bennett1, Liisa M Hirvonen1, Mathias Gautel1, Gareth E Jones1, Susan Cox2.   

Abstract

High-density analysis methods for localization microscopy increase acquisition speed but produce artifacts. We demonstrate that these artifacts can be eliminated by the combination of Haar wavelet kernel (HAWK) analysis with standard single-frame fitting. We tested the performance of this method on synthetic, fixed-cell, and live-cell data, and found that HAWK preprocessing yielded reconstructions that reflected the structure of the sample, thus enabling high-speed, artifact-free super-resolution imaging of live cells.

Entities:  

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Year:  2018        PMID: 30061677     DOI: 10.1038/s41592-018-0072-5

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  19 in total

Review 1.  Deep learning in single-molecule microscopy: fundamentals, caveats, and recent developments [Invited].

Authors:  Leonhard Möckl; Anish R Roy; W E Moerner
Journal:  Biomed Opt Express       Date:  2020-02-27       Impact factor: 3.732

2.  Highly photostable fluorescent labeling of proteins in live cells using exchangeable coiled coils heterodimerization.

Authors:  Maxim M Perfilov; Nadya G Gurskaya; Ekaterina O Serebrovskaya; Pavel A Melnikov; Sergey L Kharitonov; Tylor R Lewis; Vadim Y Arshavsky; Vladimir P Baklaushev; Alexander S Mishin; Konstantin A Lukyanov
Journal:  Cell Mol Life Sci       Date:  2020-01-02       Impact factor: 9.261

3.  Studying the Dynamics of Chromatin-Binding Proteins in Mammalian Cells Using Single-Molecule Localization Microscopy.

Authors:  Maike Steindel; Igor Orsine de Almeida; Stanley Strawbridge; Valentyna Chernova; David Holcman; Aleks Ponjavic; Srinjan Basu
Journal:  Methods Mol Biol       Date:  2022

4.  Sub-diffraction error mapping for localisation microscopy images.

Authors:  Richard J Marsh; Ishan Costello; Mark-Alexander Gorey; Donghan Ma; Fang Huang; Mathias Gautel; Maddy Parsons; Susan Cox
Journal:  Nat Commun       Date:  2021-09-23       Impact factor: 14.919

5.  Single-molecule localization microscopy.

Authors:  Mickaël Lelek; Melina T Gyparaki; Gerti Beliu; Florian Schueder; Juliette Griffié; Suliana Manley; Ralf Jungmann; Markus Sauer; Melike Lakadamyali; Christophe Zimmer
Journal:  Nat Rev Methods Primers       Date:  2021-06-03

Review 6.  Super-resolution microscopy demystified.

Authors:  Lothar Schermelleh; Alexia Ferrand; Thomas Huser; Christian Eggeling; Markus Sauer; Oliver Biehlmaier; Gregor P C Drummen
Journal:  Nat Cell Biol       Date:  2019-01-02       Impact factor: 28.824

Review 7.  Between life and death: strategies to reduce phototoxicity in super-resolution microscopy.

Authors:  Kalina L Tosheva; Yue Yuan; Pedro Matos Pereira; Siân Culley; Ricardo Henriques
Journal:  J Phys D Appl Phys       Date:  2020-02-14       Impact factor: 3.207

Review 8.  Technological advances in super-resolution microscopy to study cellular processes.

Authors:  Charles Bond; Adriana N Santiago-Ruiz; Qing Tang; Melike Lakadamyali
Journal:  Mol Cell       Date:  2022-01-20       Impact factor: 17.970

9.  Temporal Filtering to Improve Single Molecule Identification in High Background Samples.

Authors:  Alexander W A F Reismann; Lea Atanasova; Lukas Schrangl; Susanne Zeilinger; Gerhard J Schütz
Journal:  Molecules       Date:  2018-12-17       Impact factor: 4.411

10.  Coupling chromatin structure and dynamics by live super-resolution imaging.

Authors:  R Barth; K Bystricky; H A Shaban
Journal:  Sci Adv       Date:  2020-07-01       Impact factor: 14.136

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