Literature DB >> 3006035

Are C14-C15 single bond isomerizations of the retinal chromophore involved in the proton-pumping mechanism of bacteriorhodopsin?

S O Smith, I Hornung, R van der Steen, J A Pardoen, M S Braiman, J Lugtenburg, R A Mathies.   

Abstract

Resonance Raman spectroscopy is used to examine the possibility that C14-C15 single bond isomerizations of the retinal prosthetic group are involved in the photochemical reactions of bacteriorhodopsin. Normal mode calculations show that the vibration that contains predominantly C14-C15 stretch character is approximately equal to 70 cm-1 lower in frequency in the 14-s-cis conformer than in the s-trans case. This geometric effect is insensitive to out-of-plane twists and should be observed in the sterically hindered 13-cis, 14-s-cis retinal protonated Schiff base, which has been proposed as the chromophore in the K and L intermediates of bacteriorhodopsin. Resonance Raman spectra were obtained of K625 by using the low temperature (77 K) spinning-cell technique. Isotopic substitutions with 13C and 2H show that significant C14-C15 stretch character is observed in normal modes at approximately equal to 1185-1195 cm-1. The relatively high frequency of the C14-C15 stretch argues that K625 contains a 13-cis, 14-s-trans chromophore. Similarly, isotopic derivatives show that L550 has a localized C14-C15 stretch at 1172 cm-1, consistent with a 14-s-trans chromophore. These results argue that the primary step in bacteriorhodopsin is a C13=C14 trans----cis photoisomerization that does not involve C14-C15 s-cis structures.

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Year:  1986        PMID: 3006035      PMCID: PMC322991          DOI: 10.1073/pnas.83.4.967

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

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Authors:  W Stoeckenius; R H Lozier; R A Bogomolni
Journal:  Biochim Biophys Acta       Date:  1979-03-14

2.  Calculation of pi-pi excited state conformations and vibronic structure of retinal and related molecules.

Authors:  A Warshel; M Karplus
Journal:  J Am Chem Soc       Date:  1974-09-04       Impact factor: 15.419

3.  Photoisomerization, energy storage, and charge separation: a model for light energy transduction in visual pigments and bacteriorhodopsin.

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Journal:  Proc Natl Acad Sci U S A       Date:  1979-06       Impact factor: 11.205

4.  Resonance Raman spectra of bacteriorhodopsin's primary photoproduct: evidence for a distorted 13-cis retinal chromophore.

Authors:  M Braiman; R Mathies
Journal:  Proc Natl Acad Sci U S A       Date:  1982-01       Impact factor: 11.205

5.  Fourier transform infrared difference spectroscopy of bacteriorhodopsin and its photoproducts.

Authors:  K Bagley; G Dollinger; L Eisenstein; A K Singh; L Zimányi
Journal:  Proc Natl Acad Sci U S A       Date:  1982-08       Impact factor: 11.205

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Authors:  K Schulten; P Tavan
Journal:  Nature       Date:  1978-03-02       Impact factor: 49.962

7.  Environmental effects on formation and photoreaction of the M412 photoproduct of bacteriorhodopsin: implications for the mechanism of proton pumping.

Authors:  O Kalisky; M Ottolenghi; B Honig; R Korenstein
Journal:  Biochemistry       Date:  1981-02-03       Impact factor: 3.162

8.  Vibrational analysis of the all-trans retinal protonated Schiff base.

Authors:  S O Smith; A B Myers; R A Mathies; J A Pardoen; C Winkel; E M van den Berg; J Lugtenburg
Journal:  Biophys J       Date:  1985-05       Impact factor: 4.033

9.  Light-driven protonation changes of internal aspartic acids of bacteriorhodopsin: an investigation by static and time-resolved infrared difference spectroscopy using [4-13C]aspartic acid labeled purple membrane.

Authors:  M Engelhard; K Gerwert; B Hess; W Kreutz; F Siebert
Journal:  Biochemistry       Date:  1985-01-15       Impact factor: 3.162

10.  Fourier transform infrared evidence for Schiff base alteration in the first step of the bacteriorhodopsin photocycle.

Authors:  K J Rothschild; P Roepe; J Lugtenburg; J A Pardoen
Journal:  Biochemistry       Date:  1984-12-04       Impact factor: 3.162

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  10 in total

1.  Femtochemistry.

Authors:  Y Tanimura; K Yamashita; P A Anfinrud
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

2.  Nanosecond retinal structure changes in K-590 during the room-temperature bacteriorhodopsin photocycle: picosecond time-resolved coherent anti-stokes Raman spectroscopy.

Authors:  O Weidlich; L Ujj; F Jäger; G H Atkinson
Journal:  Biophys J       Date:  1997-05       Impact factor: 4.033

3.  Time-resolved Fourier transform infrared spectroscopy of the polarizable proton continua and the proton pump mechanism of bacteriorhodopsin.

Authors:  J Wang; M A El-Sayed
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

4.  Photocycles of bacteriorhodopsin in light- and dark-adapted purple membrane studied by time-resolved absorption spectroscopy.

Authors:  J Hofrichter; E R Henry; R H Lozier
Journal:  Biophys J       Date:  1989-10       Impact factor: 4.033

5.  Bacteriorhodopsin's L550 intermediate contains a C14-C15 s-trans-retinal chromophore.

Authors:  S P Fodor; W T Pollard; R Gebhard; E M van den Berg; J Lugtenburg; R A Mathies
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

6.  Resonance Raman Study of an Anion Channelrhodopsin: Effects of Mutations near the Retinylidene Schiff Base.

Authors:  Adrian Yi; Natalia Mamaeva; Hai Li; John L Spudich; Kenneth J Rothschild
Journal:  Biochemistry       Date:  2016-04-14       Impact factor: 3.162

7.  A role for internal water molecules in proton affinity changes in the Schiff base and Asp85 for one-way proton transfer in bacteriorhodopsin.

Authors:  Joel E Morgan; Robert B Gennis; Akio Maeda
Journal:  Photochem Photobiol       Date:  2008-06-28       Impact factor: 3.421

8.  Near-IR resonance Raman spectroscopy of archaerhodopsin 3: effects of transmembrane potential.

Authors:  Erica C Saint Clair; John I Ogren; Sergey Mamaev; Daniel Russano; Joel M Kralj; Kenneth J Rothschild
Journal:  J Phys Chem B       Date:  2012-12-11       Impact factor: 2.991

9.  Chromophore motion during the bacteriorhodopsin photocycle: polarized absorption spectroscopy of bacteriorhodopsin and its M-state in bacteriorhodopsin crystals.

Authors:  G F Schertler; R Lozier; H Michel; D Oesterhelt
Journal:  EMBO J       Date:  1991-09       Impact factor: 11.598

10.  Retinal chromophore structure and Schiff base interactions in red-shifted channelrhodopsin-1 from Chlamydomonas augustae.

Authors:  John I Ogren; Sergey Mamaev; Daniel Russano; Hai Li; John L Spudich; Kenneth J Rothschild
Journal:  Biochemistry       Date:  2014-06-16       Impact factor: 3.162

  10 in total

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