Literature DB >> 30059313

Privacy-Preserving Linkage of Genomic and Clinical Data Sets.

Dixie B Baker, Bartha M Knoppers, Mark Phillips, David van Enckevort, Petra Kaufmann, Hanns Lochmuller, Domenica Taruscio.   

Abstract

The capacity to link records associated with the same individual across data sets is a key challenge for data-driven research. The challenge is exacerbated by the potential inclusion of both genomic and clinical data in data sets that may span multiple legal jurisdictions, and by the need to enable re-identification in limited circumstances. Privacy-Preserving Record Linkage (PPRL) methods address these challenges. In 2016, the Interdisciplinary Committee of the International Rare Diseases Research Consortium (IRDiRC) launched a task team to explore approaches to PPRL. The task team is a collaboration with the Global Alliance for Genomics and Health (GA4GH) Regulatory and Ethics and Data Security Work Streams, and aims to prepare policy and technology standards to enable highly reliable linking of records associated with the same individual without disclosing their identity except under conditions in which the use of the data has led to information of importance to the individual's safety or health, and applicable law allows or requires the return of results. The PPRL Task Force has examined the ethico-legal requirements, constraints, and implications of PPRL, and has applied this knowledge to the exploration of technology methods and approaches to PPRL. This paper reports and justifies the findings and recommendations thus far.

Mesh:

Year:  2018        PMID: 30059313     DOI: 10.1109/TCBB.2018.2855125

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.710


  7 in total

1.  Ethical, legal, and social issues (ELSI) in rare diseases: a landscape analysis from funders.

Authors:  Adam L Hartman; Anneliene Hechtelt Jonker; Melissa A Parisi; Daria Julkowska; Nicole Lockhart; Rosario Isasi
Journal:  Eur J Hum Genet       Date:  2019-09-19       Impact factor: 4.246

2.  Recent Developments in Privacy-Preserving Mining of Clinical Data.

Authors:  Chance Desmet; Diane J Cook
Journal:  ACM IMS Trans Data Sci       Date:  2021-11

3.  De-duplicating patient records from three independent data sources reveals the incidence of rare neuromuscular disorders in Germany.

Authors:  Kirsten König; Astrid Pechmann; Simone Thiele; Maggie C Walter; David Schorling; Adrian Tassoni; Hanns Lochmüller; Clemens Müller-Reible; Janbernd Kirschner
Journal:  Orphanet J Rare Dis       Date:  2019-06-24       Impact factor: 4.123

4.  Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic.

Authors:  Núria Queralt-Rosinach; Rajaram Kaliyaperumal; César H Bernabé; Qinqin Long; Simone A Joosten; Henk Jan van der Wijk; Erik L A Flikkenschild; Kees Burger; Annika Jacobsen; Barend Mons; Marco Roos
Journal:  J Biomed Semantics       Date:  2022-04-25

5.  Bringing Code to Data: Do Not Forget Governance.

Authors:  Christine Suver; Adrian Thorogood; Megan Doerr; John Wilbanks; Bartha Knoppers
Journal:  J Med Internet Res       Date:  2020-07-28       Impact factor: 5.428

6.  Model consent clauses for rare disease research.

Authors:  Minh Thu Nguyen; Jack Goldblatt; Rosario Isasi; Marlene Jagut; Anneliene Hechtelt Jonker; Petra Kaufmann; Laetitia Ouillade; Fruszina Molnar-Gabor; Mahsa Shabani; Eric Sid; Anne Marie Tassé; Durhane Wong-Rieger; Bartha Maria Knoppers
Journal:  BMC Med Ethics       Date:  2019-08-01       Impact factor: 2.652

7.  Mainzelliste SecureEpiLinker (MainSEL): privacy-preserving record linkage using secure multi-party computation.

Authors:  Sebastian Stammler; Tobias Kussel; Phillipp Schoppmann; Florian Stampe; Galina Tremper; Stefan Katzenbeisser; Kay Hamacher; Martin Lablans
Journal:  Bioinformatics       Date:  2022-03-04       Impact factor: 6.937

  7 in total

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