Literature DB >> 30058136

Computational approaches for high-throughput single-cell data analysis.

Helena Todorov1,2,3, Yvan Saeys1,2.   

Abstract

During the past decade, the number of novel technologies to interrogate biological systems at the single-cell level has skyrocketed. Numerous approaches for measuring the proteome, genome, transcriptome and epigenome at the single-cell level have been pioneered, using a variety of technologies. All these methods have one thing in common: they generate large and high-dimensional datasets that require advanced computational modelling tools to highlight and interpret interesting patterns in these data, potentially leading to novel biological insights and hypotheses. In this work, we provide an overview of the computational approaches used to interpret various types of single-cell data in an automated and unbiased way.
© 2018 Federation of European Biochemical Societies.

Keywords:  bioinformatics; computational tools; proteome; single cell; transcriptome

Year:  2018        PMID: 30058136     DOI: 10.1111/febs.14613

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  6 in total

1.  SITC cancer immunotherapy resource document: a compass in the land of biomarker discovery.

Authors:  Siwen Hu-Lieskovan; Srabani Bhaumik; Kavita Dhodapkar; Jean-Charles J B Grivel; Sumati Gupta; Brent A Hanks; Sylvia Janetzki; Thomas O Kleen; Yoshinobu Koguchi; Amanda W Lund; Cristina Maccalli; Yolanda D Mahnke; Ruslan D Novosiadly; Senthamil R Selvan; Tasha Sims; Yingdong Zhao; Holden T Maecker
Journal:  J Immunother Cancer       Date:  2020-12       Impact factor: 13.751

2.  DMNet: Dual-Stream Marker Guided Deep Network for Dense Cell Segmentation and Lineage Tracking.

Authors:  Rina Bao; Noor M Al-Shakarji; Filiz Bunyak; Kannappan Palaniappan
Journal:  IEEE Int Conf Comput Vis Workshops       Date:  2021-11-24

Review 3.  Single-Cell Approaches to Profile the Response to Immune Checkpoint Inhibitors.

Authors:  Lara Gibellini; Sara De Biasi; Camillo Porta; Domenico Lo Tartaro; Roberta Depenni; Giovanni Pellacani; Roberto Sabbatini; Andrea Cossarizza
Journal:  Front Immunol       Date:  2020-03-20       Impact factor: 7.561

Review 4.  Recent Advances in Computer-Assisted Algorithms for Cell Subtype Identification of Cytometry Data.

Authors:  Peng Liu; Silvia Liu; Yusi Fang; Xiangning Xue; Jian Zou; George Tseng; Liza Konnikova
Journal:  Front Cell Dev Biol       Date:  2020-04-28

5.  Single Image-Based Vignetting Correction for Improving the Consistency of Neural Activity Analysis in 2-Photon Functional Microscopy.

Authors:  Dong Li; Guangyu Wang; René Werner; Hong Xie; Ji-Song Guan; Claus C Hilgetag
Journal:  Front Neuroinform       Date:  2022-01-05       Impact factor: 4.081

Review 6.  Unraveling the Heterogeneity and Ontogeny of Dendritic Cells Using Single-Cell RNA Sequencing.

Authors:  Binyao Chen; Lei Zhu; Shizhao Yang; Wenru Su
Journal:  Front Immunol       Date:  2021-09-09       Impact factor: 7.561

  6 in total

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