Jing Yang1,2, Jian-Kui Liu1, Kevin D Hyde2,3,4, E B Gareth Jones5, Zuo-Yi Liu1. 1. Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang 550006, Guizhou, China. 2. Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand. 3. Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China. 4. World Agroforestry Centre, East and Central Asia, 132 Lanhei Road, Kunming, 650201, Yunnan, China. 5. Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Huay Keaw Road, Suthep, Muang District, Chiang Mai 50200, Thailand.
Abstract
A survey of freshwater fungi on submerged wood in China and Thailand resulted in the collection of three species in Dictyocheirospora and four species in Dictyosporium including two new species in the latter genus. Morphological characters and phylogenetic analyses based on ITS, LSU and TEF1α sequence data support their placement in Dictyocheirospora and Dictyosporium (Dictyosporiaceae). An updated backbone tree is provided for the family Dictyosporiaceae. Descriptions and illustrations of the new taxa and re-collections are provided. Four new combinations are proposed for Dictyocheirospora.
A survey of freshwater fungi on submerged wood in China and Thailand resulted in the collection of three species in Dictyocheirospora and four species in Dictyosporium including two new species in the latter genus. Morphological characters and phylogenetic analyses based on ITS, LSU and TEF1α sequence data support their placement in Dictyocheirospora and Dictyosporium (Dictyosporiaceae). An updated backbone tree is provided for the family Dictyosporiaceae. Descriptions and illustrations of the new taxa and re-collections are provided. Four new combinations are proposed for Dictyocheirospora.
Entities:
Keywords:
2 new taxa; Dothideomycetes; asexual morph; phylogeny; taxonomy
The family was introduced by Boonmee et al. (2016) to accommodate mostly aquatic lignicolous species with cheiroid, digitate, palmate and/or dictyosporous conidia and their sexual morphs that form a monophyletic clade in the class ., the type genus of the family, has been reported worldwide from dead wood and plant litter in terrestrial and aquatic habitats (Hyde and Goh 1998, Ho et al. 2002, Pinnoi et al. 2006, Pinruan et al. 2007). Corda (1836) established the genus with Corda as the type species. The holomorph genus is characterised by dark brown, subglobose superficial ascomata, bitunicate cylindrical asci and hyaline, fusiform uniseptate ascospores with or without a sheath; sporodochial colonies, micronematous to macronematous conidiophores and cheiroid, digitate complanate conidia with several parallel rows of cells. Goh et al. (1999) reviewed the genus accepting 22 species and the remaining 16 species were doubtful or excluded. Tsui et al. (2006) first considered that the genus is closely related to () based on phylogenetic analysis using SSU and LSU sequence data. Tanaka et al. (2015) and Boonmee et al. (2016) confirmed the phylogenetic placement of in (, ). Recent comparisons of species were provided by Whitton et al. (2012), Prasher and Verma (2015) and Silva et al. (2015) with up to 48 accepted species. Since Silva et al. (2015), S.S. Silva, R.F. Castañeda & Gusmão, I.B. Prasher & R.K. Verma, I.B. Prasher & R.K. Verma, Kaz. Tanaka, K. Hiray., Boonmee & K.D. Hyde, Abdel-Aziz, Kaz. Tanaka, G. Sato & K. Hiray., Boonmee & K.D. Hyde, Alves-Barb., Malosso & R.F. Castañeda and Y. Zhang & G.Z. Zhao were newly introduced to the genus (Prasher and Verma 2015, Tanaka et al. 2015, Abdel-Aziz 2016, Boonmee et al. 2016, da Silva et al. 2016, Alves-Barbosa et al. 2017, Zhang et al. 2017) and nine species were re-assigned to , and (Boonmee et al. 2016). Wijayawardene et al. (2017a) provided information on the availability of cultures and references to accessible sequence data.was introduced by Boonmee et al. (2016) with D’souza, Bhat & K.D. Hyde as the type species. is morphologically similar to except in having cheiroid, non-complanate or cylindrical conidia, mostly with conidial arms closely gathered together at the apex. Ten species are accepted in the genus including four species transferred from (Boonmee et al. 2016, Wang et al. 2016, Hyde et al. 2017, Li et al. 2017).During a survey of freshwater fungi on submerged wood along a north/south gradient in the Asian/Australasian region (Hyde et al. 2016), two new freshwater species and five previously described species were collected and identified based on phylogenetic analyses and morphological characters. We therefore introduce and as new species, with an illustrated account and phylogenetic evidence for the new taxa. An updated backbone tree based on the combined ITS, LSU and TEF1α sequence data is provided for . Four new combinations are proposed in .
Materials and methods
Collection and examination of specimens
Specimens of submerged, decaying wood were collected from streams in Chiang Rai, Prachuap Khiri Khan, Phang Nga and Trat Provinces, Thailand, in December 2014, 2015, April 2016 and Guizhou Province, China, in October 2016. Specimens were brought to the laboratory in plastic bags and incubated in plastic boxes lined with moistened tissue paper at room temperature for one week. Morphological observations were made using a Motic SMZ 168 Series dissecting microscope for fungal structures on natural substrate. The fungal structures were collected using a syringe needle and transferred to a small drop of distilled water on a clean slide and covered with a cover glass. The fungi were examined using a Nikon ECLIPSE 80i compound microscope and photographed with a Canon 550D, 600D or 70D digital camera fitted to the microscope. Measurements were made with the TAROSOFT (R) IMAGE FRAME WORK programme and images used for figures were processed with ADOBE PHOTOSHOP CS6 software. Single spore isolations were made on to potato dextrose agar (PDA) or water agar (WA) and later transferred on to malt extract agar (MEA) or PDA following the method of Chomnunti et al. (2014). Specimens (dry wood with fungal material) are deposited in the herbarium of Mae Fah Luang University (MFLU), Chiang Rai, Thailand and Kunming Institute of Botany, Academia Sinica (HKAS), China. Axenic cultures are deposited in Mae Fah Luang University Culture Collection (MFLUCC). Facesoffungi and Index Fungorum numbers are registered as outlined in Jayasiri et al. (2015) and Index Fungorum (2018).
DNA extraction, PCR amplification and sequencing
Isolates were grown on PDA and/or MEA medium at 25 °C for one month. Fungal mycelium was scraped off and transferred to a 1.5-ml microcentrifuge tube using a sterilised lancet for genomic DNA extraction. Ezup Column Fungi Genomic DNA Purification Kit (Sangon Biotech, China) was used to extract DNA following the manufacturer’s instructions. ITS, LSU and TEF1α gene regions were amplified using the primer pairs ITS5 or ITS1 with ITS4 (Vilgalys and Hester 1990), LROR with LR5 or LR7 (White et al. 1990) and EF1-983F with EF1-2218R (Rehner 2001). The amplifications were performed in a 25 μl reaction volume containing 9.5 μl ddH2O, 12.5 μl 2 × Taq PCR Master Mix with blue dye (Sangon Biotech, China), 1 μl of DNA template and 1 μl of each primer (10 μM). The amplification condition for ITS, LSU and TEF1α consisted of initial denaturation at 94 °C for 3 min; followed by 40 cycles of 45 s at 94 °C, 50 s at 56 °C and 1 min at 72 °C and a final extension period of 10 min at 72 °C. Purification and sequencing of PCR products were carried out using the above-mentioned PCR primers at Sangon Biotech (Shanghai) Co. Ltd. in China.
Phylogenetic analyses
The taxa included in the phylogenetic analyses were selected and obtained from previous studies and GenBank (Boonmee et al. 2016, Wang et al. 2016, Li et al. 2017). Three gene regions (ITS, LSU and TEF1α) were used for the combined sequence data analyses. SEQMAN v. 7.0.0 (DNASTAR, Madison, WI) was used to assemble consensus sequences. The sequences were aligned using the online multiple alignment programme MAFFT v.7 (http://mafft.cbrc.jp/alignment/server/) (Katoh and Standley 2013). The alignments were checked visually and improved manually where necessary.Phylogenetic analysis of the sequence data consisted of maximum likelihood (ML) using RAxML-HPC v.8 (Stamatakis 2006, Stamatakis et al. 2008) on the XSEDE Teragrid of the CIPRES science Gateway (https://www.phylo.org) (Miller et al. 2010) with rapid bootstrap analysis, followed by 1000 bootstrap replicates. The final tree was selected amongst suboptimal trees from each run by comparing likelihood scores under the GTRGAMMA substitution model.Maximum parsimony (MP) analyses were performed with PAUP v. 4.0b10 (Swofford 2003) using the heuristic search option with 1000 random taxa addition and tree bisection and reconnection (TBR) as the branch swapping algorithm. All characters were unordered and of equal weight and gaps were treated as missing data. Maxtrees were unlimited, branches of zero length were collapsed and all multiple, equally parsimonious trees were saved. Clade stability was assessed using a bootstrap (BT) analysis with 1000 replicates, each with 10 replicates of random stepwise addition of taxa (Hillis and Bull 1993).The programme MRMODELTEST2 v. 2.3 (Nylander 2008) was used to infer the appropriate substitution model that would best fit the model of DNA evolution for the combined datasets for Bayesian inference analysis with GTR+G+I substitution model selected. Posterior probabilities (PP) (Rannala and Yang 1996, Zhaxybayeva and Gogarten 2002) were determined by Markov Chain Monte Carlo sampling (MCMC) in MRBAYES v. 3.0b4 (Huelsenbeck and Ronquist 2001). Six simultaneous Markov chains were run for 1 million generations, with trees sampled every 100 generations (resulting in 10000 trees). The first 2000 trees, representing the burn-in phase of the analyses were discarded and the remaining 8000 trees were used for calculating posterior probabilities (PP) in the majority rule consensus tree (Larget and Simon 1999).The resulting trees were printed with FIGTREE v. 1.4.0 (http://tree.bio.ed.ac.uk/software/figtree/) and the layout was created in MICROSOFT POWERPOINT for Mac v. 15.19.1. The alignment of phylogenetic analyses and resultant tree were deposited in TreeBASE (www.treebase.org, submission number 22802). Sequences generated in this study were submitted to GenBank (Table 1).
Table 1.
Isolates and sequences used in this study (newly generated sequences are indicated in bold, ex-type strains are indicated with T after strain number).
Species
Source
GenBank accession number
ITS
LSU
TEF1α
Aquadictyosporalignicola
MFLUCC 17-1318T
MF948621
MF948629
MF953164
Aquaticheirosporalignicola
HKUCC 10304T
AY864770
AY736378
–
Cheirosporiumtriseriale
HMAS 180703T
EU413953
EU413954
–
Dendryphiellaeucalyptorum
CBS 137987T
KJ869139
KJ869196
–
Dendryphiellafasciculata
MFLUCC 17-1074T
MF399213
MF399214
–
Dendryphiellaparavinosa
CBS 141286T
KX228257
KX228309
–
Dictyocheirosporaaquatica
KUMCC 15-0305T
KY320508
KY320513
–
Dictyocheirosporabannica
KH 332T
LC014543
AB807513
AB808489
Dictyocheirosporabannica
MFLUCC 16-0874
MH381765
MH381774
–
Dictyocheirosporagarethjonesii
MFLUCC 16-0909T
KY320509
KY320514
–
Dictyocheirosporagarethjonesii
DLUCC 0848
MF948623
MF948631
MF953166
Dictyocheirosporagigantica
BCC 11346
DQ018095
–
–
Dictyocheirosporaheptaspora
CBS 396.59
DQ018090
–
–
Dictyocheirosporaindica
MFLUCC 15-0056
MH381763
MH381772
MH388817
Dictyocheirosporapseudomusae
yone 234T
LC014550
AB807520
AB808496
Dictyocheirosporarotunda
MFLUCC 14-0293T
KU179099
KU179100
–
Dictyocheirosporarotunda
MFLUCC 17-0222
MH381764
MH381773
MH388818
Dictyocheirosporarotunda
MFLUCC 17-1313
MF948625
MF948633
MF953168
Dictyocheirosporasubramanianii
BCC 3503
DQ018094
–
–
Dictyocheirosporavinaya
MFLUCC 14-0294T
KU179102
KU179103
–
Dictyosporiumalatum
ATCC 34953T
NR_077171
DQ018101
–
Dictyosporiumaquaticum
MF 1318T
KM610236
–
–
Dictyosporiumbulbosum
yone 221
LC014544
AB807511
AB808487
Dictyosporiumdigitatum
KH 401
LC014545
AB807515
AB808491
Dictyosporiumdigitatum
yone 280
LC014547
AB807512
AB808488
Dictyosporiumelegans
NBRC 32502T
DQ018087
DQ018100
–
Dictyosporiumhughesii
KT 1847
LC014548
AB807517
AB808493
Dictyosporiummeiosporum
MFLUCC 10-0131T
KP710944
KP710945
–
Dictyosporiumnigroapice
BCC 3555
DQ018085
–
–
Dictyosporiumnigroapice
MFLUCC 17-2053
MH381768
MH381777
MH388821
Dictyosporiumolivaceosporum
KH 375T
LC014542
AB807514
AB808490
Dictyosporiumsexualis
MFLUCC 10-0127T
KU179105
KU179106
–
Dictyosporium sp.
MFLUCC 15-0629
MH381766
MH381775
MH388819
Dictyosporiumstellatum
CCFC 241241T
NR_154608
JF951177
–
Dictyosporiumstrelitziae
CBS 123359T
NR_156216
FJ839653
–
Dictyosporiumtetrasporum
KT 2865
LC014551
AB807519
AB808495
Dictyosporiumthailandicum
MFLUCC 13-0773T
KP716706
KP716707
–
Dictyosporiumtratense
MFLUCC 17-2052T
MH381767
MH381776
MH388820
Dictyosporiumtubulatum
MFLUCC 15-0631T
MH381769
MH381778
MH388822
Dictyosporiumtubulatum
MFLUCC 17-2056
MH381770
MH381779
–
Dictyosporiumwuyiense
CGMCC 3.18703T
KY072977
–
–
Dictyosporiumzhejiangense
MW-2009aT
FJ456893
–
–
Digitodesmiumbambusicola
CBS 110279T
DQ018091
DQ018103
–
Gregaritheciumcurvisporum
KT 922T
AB809644
AB807547
–
Jalapriyainflata
NTOU 3855
JQ267362
JQ267363
–
Jalapriyapulchra
MFLUCC 15-0348T
KU179108
KU179109
–
Jalapriyapulchra
MFLUCC 17-1683
MF948628
MF948636
MF953171
Jalapriyatoruloides
CBS 209.65
DQ018093
DQ018104
–
Periconiaigniaria
CBS 379.86
LC014585
AB807566
AB808542
Periconiaigniaria
CBS 845.96
LC014586
AB807567
AB808543
Pseudocoleophomacalamagrostidis
KT 3284T
LC014592
LC014609
LC014614
Pseudocoleophomapolygonicola
KT 731T
AB809634
AB807546
AB808522
Pseudocoleophomatyphicola
MFLUCC 16-0123T
KX576655
KX576656
–
Pseudodictyosporiumelegans
CBS 688.93T
DQ018099
DQ018106
–
Pseudodictyosporiumindicum
CBS 471.95
DQ018097
–
–
Pseudodictyosporiumthailandica
MFLUCC 16-0029T
KX259520
KX259522
KX259526
Pseudodictyosporiumwauense
NBRC 30078
DQ018098
DQ018105
–
Pseudodictyosporiumwauense
DLUCC 0801
MF948622
MF948630
MF953165
Vikalpaaustraliensis
HKUCC 8797T
DQ018092
–
–
Isolates and sequences used in this study (newly generated sequences are indicated in bold, ex-type strains are indicated with T after strain number).
Phylogenetic results
The analysed dataset consisted of combined ITS (557 bp), LSU (803 bp) and TEF1α (918 bp) sequence data (a total of 2278 characters including gaps) for 59 taxa in with E.W. Mason & M.B. Ellis (CBS 379.86, CBS 845.96) as the outgroup taxon. The best scoring RAxML tree is shown in Figure 1.
Figure 1.
Maximum likelihood majority rule consensus tree for the analysed isolates based on a dataset of combined ITS, LSU and TEF1α sequence data. Bootstrap support values for maximum likelihood (ML) and maximum parsimony (MP) greater than 75% and Bayesian posterior probabilities greater than 0.95 are indicated above the nodes as MLBS/MPBS/PP. The scale bar represents the expected number of changes per site. The tree is rooted with (CBS 379.86, CBS 845.96). The strain numbers are noted after the species names with ex-type strains indicated with T. The new collections are in bold with new taxa in red. Branches with 100% ML BS, 100% MP BS and 1.0 PP are shown as black nodes. Genera are indicated as coloured blocks.
Maximum likelihood majority rule consensus tree for the analysed isolates based on a dataset of combined ITS, LSU and TEF1α sequence data. Bootstrap support values for maximum likelihood (ML) and maximum parsimony (MP) greater than 75% and Bayesian posterior probabilities greater than 0.95 are indicated above the nodes as MLBS/MPBS/PP. The scale bar represents the expected number of changes per site. The tree is rooted with (CBS 379.86, CBS 845.96). The strain numbers are noted after the species names with ex-type strains indicated with T. The new collections are in bold with new taxa in red. Branches with 100% ML BS, 100% MP BS and 1.0 PP are shown as black nodes. Genera are indicated as coloured blocks.Phylogenetic analyses indicated the placement of three isolates (MFLUCC 15-0056, MFLLUCC 16-0874 and MFLUCC 17-0222) within the genus . Five isolates (MFLUCC 15-0629, MFLUCC 17-2052, MFLUCC 17-2056, MFLUCC 15-0631 and MFLUCC 17-2053) nested in . Phylogenetic results showed that (MFLUCC 15-0056) clustered with (B. Sutton) D'souza, Boonmee & K.D. Hyde (BCC 3503) with good support. (MFLUCC 16-0874) was placed as sister taxon to the ex-type strain (KH 332). (MFLUCC 17-0222) grouped together with (MFLUCC 17-1313) and the ex-type strain (MFLUCC 14-0293) with strong support. The strain sp. (MFLUCC 15-0629) clustered as sister taxon to J.L. Chen, C.H. Hwang & Tzean (KH 401), Abdel-Aziz (MF 1318) and G.P. White & Seifert (CCFC 241241). The new taxon (MFLUCC 17-2052) formed a single clade within which is distinct from other species in the genus. The new collection (MFLUCC 17-2053) was placed as sister taxon to a previous isolate (BCC 3555). Two isolates of the new taxon (MFLUCC 15-0631 and MFLUCC 17-2056) nested in as sister clade to (MFLUCC 17-2053 and BCC 3555).
(MFLU 18-1040) a Colonies on submerged wood b
and conidiophores c–f
g Germinated conidium h, i Culture, h from above, i from reverse. Scale bars: a = 200 μm, b, g = 50 μm, c–f = 30 μm.
Material examined.
THAILAND. Phang Nga Province, Bann Tom Thong Khang, on decaying wood submerged in a freshwater stream, 17 Dec 2015, J. Yang, Site 7-70-1 (MFLU 18-1040, HKAS 102131), living culture MFLUCC 16-0874 (Additional SSU sequence GenBank MH381759).
Notes.
The phylogenetic result showed the strain MFLUCC 16-0874 clustered with the ex-type (KH 332) of . The morphological examination of this collection matched well with the holotype of (Boonmee et al. 2016). was previously collected in Japan, while this is a new record for Thailand.(MFLU 18-1040) a Colonies on submerged wood b
and conidiophores c–f
g Germinated conidium h, i Culture, h from above, i from reverse. Scale bars: a = 200 μm, b, g = 50 μm, c–f = 30 μm.(I.B. Prasher & R.K. Verma) J. Yang & K.D. Hyde
comb. nov.
INDIA. Himachal Pradesh, Bilaspur, on bark of , 17 September 2013, I.B. Prasher and R.K. Verma (PAN 30364).Considering the latest generic concept of and , we suggest that should be referred to with the key character of non-complanate or cylindrical conidia with conidial arms closely gathered together at the apex. We have not examined the holotype of . The details provided by Prasher and Verma (2015) are adequate being illustrative and descriptive.(I.B. Prasher & R.K. Verma) J. Yang & K.D. Hyde
comb. nov.Figure 3
Figure 3.
(MFLU 15-1169, reference specimen). a Substrate b, c Colonies on woody substrate d, e Conidial formation f–i
with partial conidiophores j–o
p Germinated conidium q–r Culture, q from above, r from reverse. Scale bars: b = 200 μm, c = 100 μm, d–i, l–o = 20 μm, j = 10 μm, k = 15 μm, p = 30 μm.
I.B. Prasher & R.K. Verma, Phytotaxa 204 (3): 194 (2015).INDIA. Himachal Pradesh, Mandi, on petiole of , 19 November 2012, I.B. Prasher and R.K. Verma (PAN 30313).THAILAND. Chiang Rai, stream flowing in Tham Luang Nang Non Cave, on decaying submerged wood, 25 November 2014, J. Yang, YJ-3 (MFLU 15-1169 reference specimen designated here, HKAS 102135), living culture MFLUCC 15-0056 (Additional SSU sequence GenBank MH381757).Collection MFLU 15-1169 was identified as () based on morphological examination. Phylogenetic analyses indicated the placement of this taxon within and sister to (BCC 3503). differs from in lacking appendages. resembles in having non-complanate, cylindrical conidia with globose to subglobose appendages. However, conidial appendages of are attached at the subapical cells, while appendages of are attached at the central cells of the outer cell-row. The conidial size of (33–48 × 13–18 µm) is smaller than that of (45–65 × 20–27 µm) (Photita et al. 2002, Prasher and Verma 2015). In this study, sequence data of our collection (MFLUCC 15-0056) was generated and, as there is no sequence data available for the previous collection (), we therefore designated our collection as the reference specimen (sensu
Ariyawansa et al. 2014) for .(MFLU 15-1169, reference specimen). a Substrate b, c Colonies on woody substrate d, e Conidial formation f–i
with partial conidiophores j–o
p Germinated conidium q–r Culture, q from above, r from reverse. Scale bars: b = 200 μm, c = 100 μm, d–i, l–o = 20 μm, j = 10 μm, k = 15 μm, p = 30 μm.(Photita) J. Yang, K.D. Hyde & Z.Y. Liu
comb. nov.Photita, Mycotaxon 82: 416 (2002)THAILAND. Mae Hong Son Province, Sob Mei, Huay Thicha Village, on decaying petioles of , 23 November 2000, W. Photita (PDD 74135).Notes.
is morphologically similar to in having non-complanate, cylindrical conidia with globose to subglobose appendages. However, differs in having appendages in the middle cells while has appendages on the basal cells (Photita et al. 2002, Prasher and Verma 2015).D’souza, Bhat & K.D. Hyde, Fungal Diversity 80: 465 (2016)Figure 4
Figure 4.
(MFLU 18-1041). a Colonies on submerged wood b, c Germinated conidia d
e, f Culture, e from above, f from reverse. Scale bars: a = 200 μm, b, c = 20 μm, d = 50 μm.
CHINA. Guizhou Province, Anshun city, Gaodang village, , on decaying wood submerged in Suoluo river, 19 October 2016, J. Yang, GD 2-3 (MFLU 18-1041, HKAS 102132), living culture MFLUCC 17-0222 (Additional SSU sequence GenBank MH381758).This species is known in China and Thailand from freshwater habitats (Boonmee et al. 2016, Wang et al. 2016).(MFLU 18-1041). a Colonies on submerged wood b, c Germinated conidia d
e, f Culture, e from above, f from reverse. Scale bars: a = 200 μm, b, c = 20 μm, d = 50 μm.(L. Cai & K.D. Hyde) J. Yang & K.D. Hyde
comb. nov.L. Cai & K.D. Hyde, Sydowia 55 (2): 132 (2003)CHINA. Yunnan, Xishuangbanna, Menglun, a small stream, on submerged wood, 21 June 2002, L. Cai (HKUM 17146).is morphologically similar to in conidial shape, size, colour and appendages. However, conidia of have 5-rowed cells, while those of are 7-rowed cells (Photita et al. 2002, Cai et al. 2003).J. Yang, K.D. Hyde & Z.Y. Liu
sp. nov.Figure 5
Figure 5.
(MFLU 15-1166, holotype). a, b Colonies on woody substrate c Squash mount of a sporodochium d–g
h–i
with conidiophores j–l
with appendages m lateral view of a conidium n Germinated conidium o, p Culture, o from above p from reverse. Scale bars: a = 1000 μm, b = 200 μm, c, n = 30 μm, d, e = 10 μm, f–m = 15 μm.
Etymology.
Referring to the tubular conidial appendages.
Description.
Saprobic on decaying plant substrates. Asexual morph: Colonies punctiform, sporodochial, scattered, dark brown to black, glistening. Mycelium mostly immersed, composed of smooth, septate, branched, hyaline to pale brown hyphae. micronematous, mononematous, septate, cylindrical, hyaline to pale brown, smooth-walled, 6.5–15 × 3.5–6 μm, sometimes reduced to conidiogenous cells. monoblastic, integrated, terminal, determinate, hyaline to pale brown. acrogenous, solitary, cheiroid, smooth-walled, complanate, yellowish-brown to medium brown, mostly consisting of four arms closely compact with side arms lower than middle arms, rarely with five arms, 5–7-euseptate in each arm, guttulate, (22–)29–35(–38) × (14–)17–19(–22) μm (x¯ = 32.5 × 18 μm, n = 40), with hyaline, tubular, elongated appendages which are 19–24 × 3.5–7 μm and mostly attached at the apical part of two outer arms. Sexual morph: Undetermined.
Cultural characteristics.
germinating on PDA within 24 h and germ tubes produced from the basal cell. Colonies on MEA reaching 5–10 mm diam. in a week at 25 °C, in natural light, circular, with fluffy, dense, white mycelium on the surface with entire margin; in reverse yellow in the middle and white at the margin.THAILAND. Prachuap Khiri Khan Province, near , on decaying wood submerged in a freshwater stream, 25 December 2014, J. van Strien, Site 5-11-1 (MFLU 15-1166 holotype, HKAS 102136 isotype), ex-type living culture MFLUCC 15-0631; ibid. Trat Province, Amphoe Ko Chang, , on decaying wood submerged in a freshwater stream, 27 April 2017, Y.Z. Lu, YJT 22-2 (MFLU 18-1044, HKAS 102137 paratype), living culture MFLUCC 17-2056.Phylogenetic analyses showed that nested in and sister to . morphologically resembles Emden, L. Cai & K.D. Hyde and D’ souza, D.J. Bhat & K.D. Hyde in conidial ontogeny and conidial shape, colour and appendages. differs from the three species in the number of conidial cell rows. There are mostly four conidial columns in while mostly five columns in the others. has smaller conidia (25–38 × 14–22 μm) than those in (32.5–47.5 × 20–25 μm) but has similar conidial size with (26–32 × 15–24 μm) and (15.4–34.5 × 14.5–20.6 μm) (Cai et al. 2003, Liu et al. 2015). Based on the molecular phylogeny, is distinct from and . Unfortunately, molecular data are unavailable for .(MFLU 15-1166, holotype). a, b Colonies on woody substrate c Squash mount of a sporodochium d–g
h–i
with conidiophores j–l
with appendages m lateral view of a conidium n Germinated conidium o, p Culture, o from above p from reverse. Scale bars: a = 1000 μm, b = 200 μm, c, n = 30 μm, d, e = 10 μm, f–m = 15 μm.J. Yang & K.D. Hyde
sp. nov.Figure 6
Figure 6.
(MFLU 18-1042, holotype). a Colonies on submerged wood b Squash mount of a sporodochium c Germinated conidium d–i
j, k Culture j from above k from reverse. Scale bars: a = 200 μm, b = 50 μm, c = 30 μm, d–i = 20 μm.
Referring to the collecting site in Trat province, Thailand.Saprobic> on decaying plant substrates. Asexual morph: Colonies punctiform, sporodochial, scattered, black, glistening. Mycelium mostly immersed, composed of smooth, septate, branched, hyaline to pale brown hyphae. micronematous, mononematous, septate, cylindrical, hyaline to pale brown, smooth-walled, sometimes reduced to conidiogenous cells. monoblastic, integrated, terminal, determinate, hyaline to pale brown. (40–)43–54(–57) × (20–)23–32(–36) μm (x¯ = 49.5 × 26 μm, n = 40), acrogenous, solitary, cheiroid, smooth-walled, complanate, yellowish-brown to light brown, consisting of 39–68 cells arranged in 4–6 (mostly 5) closely compact columns, 9–11-euseptate in each column, guttulate; the inner columns nested within the outer columns, the outer columns derived from the basal cell of the conidium; the intermediate columns are derived from the first or second cell of the outer columns; the inner columns derived from the first or second cell of the intermediate columns; usually with 2–3 central columns longest and of equal length, 2–3 peripheral columns shorter and of equal length; sometimes with hyaline globose appendages at the apical cells of outer columns with hyaline cloud-shaped mucilaginous sheath. Sexual morph: Undetermined.germinating on PDA within 24 h and germ tubes produced from basal cell. Colonies on MEA reaching 5–10 mm diam. in a week at 25 °C, in natural light, circular, with fluffy, dense, pale yellow mycelium in the middle and sparse mycelium in the outer ring on the surface with irregular margin; in reverse, dark yellow to brown in the middle and pale yellow at the margin.THAILAND. Trat Province, Amphoe Ko Chang, , on decaying wood submerged in a freshwater stream, 27 April 2017, Y.Z. Lu, YJT 6-2 (MFLU 18-1042 holotype, HKAS 102133 isotype), ex-type living culture MFLUCC 17-2052 (Additional SSU sequence GenBank MH381761).Phylogenetic analyses indicated nested within and close to . It is distinguished from the other species in the genus in having a mucilaginous sheath. Morphologically, is most comparable to in conidial colour and shape, but conidia of the new taxon (40-57 × 20-36 μm) are smaller than those of (40-80 × 24-36 μm) (Goh et al. 1999).(MFLU 18-1042, holotype). a Colonies on submerged wood b Squash mount of a sporodochium c Germinated conidium d–i
j, k Culture j from above k from reverse. Scale bars: a = 200 μm, b = 50 μm, c = 30 μm, d–i = 20 μm.sp.Figure 7
Figure 7.
sp. (MFLU 15-1164). a Colonies on submerged wood b Squash mount of a sporodochium; c Germinated conidium b–e, h, i
f Germinated conidium g
with conidiophores j, k Culture, j from above, k from reverse. Scale bars: a = 200 μm, b, f–i = 30 μm, c = 50 μm d, e = 20 μm.
THAILAND. Prachuap Khiri Khan Province, near , on decaying wood submerged in a freshwater stream, 25 December 2014, J. van Strien, Site 5-5-1 (MFLU 15-1164), living culture MFLUCC 15-0629 (Additional SSU sequence GenBank MH381760).Phylogenetic analyses indicated the isolate sp. (MFLUCC 15-0629) was placed as sister taxon to (KH 401), (MF 1318) and (CCFC 241241) with good support. The strain (KH 401), (MF 1318) and our strain MFLUCC 15-0629, showed the same nucleotide (490 bp) between them for ITS gene regions, while there is only one nucleotide difference between our strain and (CCFC 241241). However, the strain sp. (MFLUCC 15-0629) showed seven nucleotides different from (yone 280) for ITS gene regions. Morphologically, and share the character in having appendages borne at the terminal cells of each conidial arm (Chen et al. 1991, Liu et al. 2015). differs from and in lacking conidial appendages (Crous et al. 2011). In this case, it is difficult to identify our collection based on the recommendations advocated by Jeewon and Hyde (2016) for differentiating species or establishing new species. Thus, we recommend designating this collection as unknown species until enough evidence is available for its identification.sp. (MFLU 15-1164). a Colonies on submerged wood b Squash mount of a sporodochium; c Germinated conidium b–e, h, i
f Germinated conidium g
with conidiophores j, k Culture, j from above, k from reverse. Scale bars: a = 200 μm, b, f–i = 30 μm, c = 50 μm d, e = 20 μm.Goh, W.H. Ho & K.D. Hyde, Fungal Diversity 2: 83 (1999)Figure 8
Figure 8.
(MFLU18-1043). a Colonies on submerged wood b, c
and conidiophores d–j
k Germinated conidium l, m Culture, l from above, m from reverse. Scale bars: a = 100 μm, b, c, j = 20 μm, d–i = 10 μm, k = 30 μm.
THAILAND. Trat Province, Amphoe Ko Chang, , on decaying wood submerged in a freshwater stream, 27 April 2017, Y.Z. Lu, YJT 7-1 (MFLU 18-1043, HKAS 102134), living culture MFLUCC 17-2053 (Additional SSU sequence GenBank MH381762).in are characterised by conspicuously darker apical cells of the two inner arms, rarely darker at the apex of the outer arms. Morphological characters of this collection well agree with the original diagnosis of the holotype of (Goh et al. 1999).(MFLU18-1043). a Colonies on submerged wood b, c
and conidiophores d–j
k Germinated conidium l, m Culture, l from above, m from reverse. Scale bars: a = 100 μm, b, c, j = 20 μm, d–i = 10 μm, k = 30 μm.
Discussion
accommodates a holomorphic group of , including 12 genera with nine being dictyosporous (Wijayawardene et al. 2017b, Wijayawardene et al. 2018). and are the two largest genera in the family. has cheiroid, digitate and complanate conidia without separating arms, while is characterised by non-complanate conidia with arms arising from the basal cell and closely gathered at the apex and compact. Thus, , , and are transferred to based on the clear morphological characters. Phylogenetic analyses revealed the placement of (MFLUCC 15-0056 reference specimen) within . We believe that the other three species belong to in having similar conidia and appendages to , although molecular data are unavailable for them.
Authors: K Tanaka; K Hirayama; H Yonezawa; G Sato; A Toriyabe; H Kudo; A Hashimoto; M Matsumura; Y Harada; Y Kurihara; T Shirouzu; T Hosoya Journal: Stud Mycol Date: 2015-11-18 Impact factor: 16.097
Authors: P W Crous; J Z Groenewald; R G Shivas; J Edwards; K A Seifert; A C Alfenas; R F Alfenas; T I Burgess; A J Carnegie; G E St J Hardy; N Hiscock; D Hüberli; T Jung; G Louis-Seize; G Okada; O L Pereira; M J C Stukely; W Wang; G P White; A J Young; A R McTaggart; I G Pascoe; I J Porter; W Quaedvlieg Journal: Persoonia Date: 2011-05-31 Impact factor: 11.051
Authors: Mark S Calabon; E B Gareth Jones; Saranyaphat Boonmee; Mingkwan Doilom; Saisamorn Lumyong; Kevin D Hyde Journal: J Fungi (Basel) Date: 2021-02-05