Literature DB >> 30055874

LncPipe: A Nextflow-based pipeline for identification and analysis of long non-coding RNAs from RNA-Seq data.

Qi Zhao1, Yu Sun2, Dawei Wang3, Hongwan Zhang1, Kai Yu1, Jian Zheng4, Zhixiang Zuo5.   

Abstract

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Year:  2018        PMID： 30055874     DOI： 10.1016/j.jgg.2018.06.005

Source DB:  PubMed          Journal:  J Genet Genomics        ISSN： 1673-8527            Impact factor:   4.275


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  5 in total

1.  Analysis of Annotated and Unannotated Long Noncoding RNAs from Exosome Subtypes Using Next-Generation RNA Sequencing.

Authors:  Wittaya Suwakulsiri; Maoshan Chen; David W Greening; Rong Xu; Richard J Simpson
Journal:  Methods Mol Biol       Date:  2021

2.  Integration of Transcriptomics Data and Metabolomic Data Using Biomedical Literature Mining and Pathway Analysis.

Authors:  Archana Prabahar
Journal:  Methods Mol Biol       Date:  2022

3.  Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis.

Authors:  Amita Kashyap; Adelaide Rhodes; Brent Kronmiller; Josie Berger; Ashley Champagne; Edward W Davis; Mitchell V Finnegan; Matthew Geniza; David A Hendrix; Christiane V Löhr; Vanessa M Petro; Thomas J Sharpton; Jackson Wells; Clinton W Epps; Pankaj Jaiswal; Brett M Tyler; Stephen A Ramsey
Journal:  BMC Genomics       Date:  2020-02-12       Impact factor: 3.969

4.  A bioinformatic-assisted workflow for genome-wide identification of ncRNAs.

Authors:  Matthias Schmal; Crystal Girod; Debbie Yaver; Robert L Mach; Astrid R Mach-Aigner
Journal:  NAR Genom Bioinform       Date:  2022-08-15

5.  Profiles of Long Non-Coding RNAs and mRNA Expression in Human Macrophages Regulated by Interleukin-27.

Authors:  Xiaojun Hu; Suranjana Goswami; Ju Qiu; Qian Chen; Sylvain Laverdure; Brad T Sherman; Tomozumi Imamichi
Journal:  Int J Mol Sci       Date:  2019-12-09       Impact factor: 5.923
  5 in total

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