Literature DB >> 30054723

[Genetic diagnostics of retinal dystrophies : Breakthrough with new methods of DNA sequencing].

H J Bolz1.   

Abstract

Until the mid-2000s, knowledge about the genetic causes of retinal dystrophies was not adequately translated into molecular diagnostics and genetic counselling offered to the patients. Although many genes whose mutations underlie retinal degeneration, e.g., retinitis pigmentosa, Leber congenital amaurosis and cone-rod dystrophies were known, they could not be analyzed on a routine diagnostic basis because DNA sequencing was too expensive and time-consuming. New methods summarized under the term next-generation sequencing (NGS) procedures for high-throughput sequencing have changed this completely. In its initial application in research NGS greatly accelerated the pace of novel disease gene identification: the mutations of most patients with retinal dystrophies can today be found in genes which are known to be associated with the condition. Since approximately 2010, NGS has expanded into routine diagnostics. In most patients, this now enables a genetic diagnosis and therefore specific genetic counselling and medical treatment. Constantly improving bioinformatics and comprehensive databases facilitate the evaluation of the complex NGS data. Nevertheless, profound scientific knowledge regarding the genetics of retinal dystrophies is indispensable to avoid erroneous data interpretation. This is also true for the close interaction between ophthalmologists and medical geneticists.

Entities:  

Keywords:  Disease genes; Genoytpe-phenotype correlation; Next-generation sequencing; Whole-exome sequencing; Whole-genome sequencing

Mesh:

Year:  2018        PMID: 30054723     DOI: 10.1007/s00347-018-0762-5

Source DB:  PubMed          Journal:  Ophthalmologe        ISSN: 0941-293X            Impact factor:   1.059


  15 in total

Review 1.  Random monoallelic expression of autosomal genes: stochastic transcription and allele-level regulation.

Authors:  Björn Reinius; Rickard Sandberg
Journal:  Nat Rev Genet       Date:  2015-10-07       Impact factor: 53.242

2.  Ophthalmic Features of Children Not Yet Diagnosed with Alstrom Syndrome.

Authors:  Arif O Khan; Inam N Bifari; Hanno J Bolz
Journal:  Ophthalmology       Date:  2015-04-10       Impact factor: 12.079

Review 3.  What can exome sequencing do for you?

Authors:  Jacek Majewski; Jeremy Schwartzentruber; Emilie Lalonde; Alexandre Montpetit; Nada Jabado
Journal:  J Med Genet       Date:  2011-07-05       Impact factor: 6.318

4.  Deep intronic mutation in OFD1, identified by targeted genomic next-generation sequencing, causes a severe form of X-linked retinitis pigmentosa (RP23).

Authors:  Tom R Webb; David A Parfitt; Jessica C Gardner; Ariadna Martinez; Dalila Bevilacqua; Alice E Davidson; Ilaria Zito; Dawn L Thiselton; Jacob H C Ressa; Marina Apergi; Nele Schwarz; Naheed Kanuga; Michel Michaelides; Michael E Cheetham; Michael B Gorin; Alison J Hardcastle
Journal:  Hum Mol Genet       Date:  2012-05-22       Impact factor: 6.150

5.  Identification and Rescue of Splice Defects Caused by Two Neighboring Deep-Intronic ABCA4 Mutations Underlying Stargardt Disease.

Authors:  Silvia Albert; Alejandro Garanto; Riccardo Sangermano; Mubeen Khan; Nathalie M Bax; Carel B Hoyng; Jana Zernant; Winston Lee; Rando Allikmets; Rob W J Collin; Frans P M Cremers
Journal:  Am J Hum Genet       Date:  2018-03-08       Impact factor: 11.025

6.  A deep intronic CLRN1 (USH3A) founder mutation generates an aberrant exon and underlies severe Usher syndrome on the Arabian Peninsula.

Authors:  Arif O Khan; Elvir Becirovic; Christian Betz; Christine Neuhaus; Janine Altmüller; Lisa Maria Riedmayr; Susanne Motameny; Gudrun Nürnberg; Peter Nürnberg; Hanno J Bolz
Journal:  Sci Rep       Date:  2017-05-03       Impact factor: 4.379

7.  Diagnostic exome sequencing in 266 Dutch patients with visual impairment.

Authors:  Lonneke Haer-Wigman; Wendy Ag van Zelst-Stams; Rolph Pfundt; L Ingeborgh van den Born; Caroline Cw Klaver; Joke Bgm Verheij; Carel B Hoyng; Martijn H Breuning; Camiel Jf Boon; Anneke J Kievit; Virginie Jm Verhoeven; Jan Wr Pott; Suzanne Ceh Sallevelt; Johanna M van Hagen; Astrid S Plomp; Hester Y Kroes; Stefan H Lelieveld; Jayne Y Hehir-Kwa; Steven Castelein; Marcel Nelen; Hans Scheffer; Dorien Lugtenberg; Frans Pm Cremers; Lies Hoefsloot; Helger G Yntema
Journal:  Eur J Hum Genet       Date:  2017-02-22       Impact factor: 4.246

8.  Next-generation sequencing reveals the mutational landscape of clinically diagnosed Usher syndrome: copy number variations, phenocopies, a predominant target for translational read-through, and PEX26 mutated in Heimler syndrome.

Authors:  Christine Neuhaus; Tobias Eisenberger; Christian Decker; Sandra Nagl; Cornelia Blank; Markus Pfister; Ingo Kennerknecht; Cornelie Müller-Hofstede; Peter Charbel Issa; Raoul Heller; Bodo Beck; Klaus Rüther; Diana Mitter; Klaus Rohrschneider; Ute Steinhauer; Heike M Korbmacher; Dagmar Huhle; Solaf M Elsayed; Hesham M Taha; Shahid M Baig; Heidi Stöhr; Markus Preising; Susanne Markus; Fabian Moeller; Birgit Lorenz; Kerstin Nagel-Wolfrum; Arif O Khan; Hanno J Bolz
Journal:  Mol Genet Genomic Med       Date:  2017-07-06       Impact factor: 2.183

9.  Compound inheritance of a low-frequency regulatory SNP and a rare null mutation in exon-junction complex subunit RBM8A causes TAR syndrome.

Authors:  Cornelis A Albers; Dirk S Paul; Harald Schulze; Kathleen Freson; Jonathan C Stephens; Peter A Smethurst; Jennifer D Jolley; Ana Cvejic; Myrto Kostadima; Paul Bertone; Martijn H Breuning; Najet Debili; Panos Deloukas; Rémi Favier; Janine Fiedler; Catherine M Hobbs; Ni Huang; Matthew E Hurles; Graham Kiddle; Ingrid Krapels; Paquita Nurden; Claudia A L Ruivenkamp; Jennifer G Sambrook; Kenneth Smith; Derek L Stemple; Gabriele Strauss; Chantal Thys; Chris van Geet; Ruth Newbury-Ecob; Willem H Ouwehand; Cedric Ghevaert
Journal:  Nat Genet       Date:  2012-02-26       Impact factor: 38.330

10.  Increasing the yield in targeted next-generation sequencing by implicating CNV analysis, non-coding exons and the overall variant load: the example of retinal dystrophies.

Authors:  Tobias Eisenberger; Christine Neuhaus; Arif O Khan; Christian Decker; Markus N Preising; Christoph Friedburg; Anika Bieg; Martin Gliem; Peter Charbel Issa; Frank G Holz; Shahid M Baig; Yorck Hellenbroich; Alberto Galvez; Konrad Platzer; Bernd Wollnik; Nadja Laddach; Saeed Reza Ghaffari; Maryam Rafati; Elke Botzenhart; Sigrid Tinschert; Doris Börger; Axel Bohring; Julia Schreml; Stefani Körtge-Jung; Chayim Schell-Apacik; Khadijah Bakur; Jumana Y Al-Aama; Teresa Neuhann; Peter Herkenrath; Gudrun Nürnberg; Peter Nürnberg; John S Davis; Andreas Gal; Carsten Bergmann; Birgit Lorenz; Hanno J Bolz
Journal:  PLoS One       Date:  2013-11-12       Impact factor: 3.240

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  2 in total

Review 1.  [Imaging and molecular genetic diagnostics for the characterization of retinal dystrophies].

Authors:  J Birtel; M Gliem; F G Holz; P Herrmann
Journal:  Ophthalmologe       Date:  2018-12       Impact factor: 1.059

2.  Comprehensive Geno- and Phenotyping in a Complex Pedigree Including Four Different Inherited Retinal Dystrophies.

Authors:  Johannes Birtel; Martin Gliem; Kristina Hess; Theresa H Birtel; Frank G Holz; Ulrich Zechner; Hanno J Bolz; Philipp Herrmann
Journal:  Genes (Basel)       Date:  2020-01-28       Impact factor: 4.096

  2 in total

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