Literature DB >> 30054568

High-throughput determination of RNA structures.

Eric J Strobel1, Angela M Yu2, Julius B Lucks3.   

Abstract

RNA performs and regulates a diverse range of cellular processes, with new functional roles being uncovered at a rapid pace. Interest is growing in how these functions are linked to RNA structures that form in the complex cellular environment. A growing suite of technologies that use advances in RNA structural probes, high-throughput sequencing and new computational approaches to interrogate RNA structure at unprecedented throughput are beginning to provide insights into RNA structures at new spatial, temporal and cellular scales.

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Year:  2018        PMID: 30054568     DOI: 10.1038/s41576-018-0034-x

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  43 in total

1.  Characterizing Genetic Parts and Devices Using RNA Sequencing.

Authors:  Deepti Vipin; Zoya Ignatova; Thomas E Gorochowski
Journal:  Methods Mol Biol       Date:  2021

2.  Predicting RNA Scaffolds with a Hybrid Method of Vfold3D and VfoldLA.

Authors:  Xiaojun Xu; Shi-Jie Chen
Journal:  Methods Mol Biol       Date:  2021

3.  RNA base-pairing complexity in living cells visualized by correlated chemical probing.

Authors:  Anthony M Mustoe; Nicole N Lama; Patrick S Irving; Samuel W Olson; Kevin M Weeks
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-19       Impact factor: 11.205

4.  Small molecule-RNA targeting: starting with the fundamentals.

Authors:  Amanda E Hargrove
Journal:  Chem Commun (Camb)       Date:  2020-11-26       Impact factor: 6.222

5.  Anomalous Reverse Transcription through Chemical Modifications in Polyadenosine Stretches.

Authors:  Wipapat Kladwang; Ved V Topkar; Bei Liu; Ramya Rangan; Tracy L Hodges; Sarah C Keane; Hashim Al-Hashimi; Rhiju Das
Journal:  Biochemistry       Date:  2020-06-01       Impact factor: 3.162

6.  GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering.

Authors:  Milad Miladi; Eteri Sokhoyan; Torsten Houwaart; Steffen Heyne; Fabrizio Costa; Björn Grüning; Rolf Backofen
Journal:  Gigascience       Date:  2019-12-01       Impact factor: 6.524

Review 7.  Physical and Functional Analysis of Viral RNA Genomes by SHAPE.

Authors:  Mark A Boerneke; Jeffrey E Ehrhardt; Kevin M Weeks
Journal:  Annu Rev Virol       Date:  2019-07-23       Impact factor: 10.431

Review 8.  RNA structure probing uncovers RNA structure-dependent biological functions.

Authors:  Xi-Wen Wang; Chu-Xiao Liu; Ling-Ling Chen; Qiangfeng Cliff Zhang
Journal:  Nat Chem Biol       Date:  2021-06-25       Impact factor: 15.040

Review 9.  SHAPE Directed Discovery of New Functions in Large RNAs.

Authors:  Kevin M Weeks
Journal:  Acc Chem Res       Date:  2021-05-07       Impact factor: 22.384

10.  In Vivo and In Vitro Genome-Wide Profiling of RNA Secondary Structures Reveals Key Regulatory Features in Plasmodium falciparum.

Authors:  Yanwei Qi; Yuhong Zhang; Guixing Zheng; Bingxia Chen; Mengxin Zhang; Jian Li; Tao Peng; Jun Huang; Xinhua Wang
Journal:  Front Cell Infect Microbiol       Date:  2021-05-17       Impact factor: 5.293

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