Literature DB >> 30053438

Snake Venomics Display: An online toolbox for visualization of snake venomics data.

Søren H Dam1, Rasmus U W Friis1, Søren D Petersen2, Andrea Martos-Esteban1, Andreas H Laustsen3.   

Abstract

With the introduction of powerful mass spectrometry equipment into the field of snake venom proteomics, a large body of venomics data is accumulating. To allow for better comparison between venom compositions from different snake species and to provide an online database containing this data, we devised the Snake Venomics Display toolbox for visualization of snake venomics data on linear scales. This toolbox is freely available to be used online at https://tropicalpharmacology.com/tools/snake-venomics-display/ and allows researchers to visualize venomics data in a Relative Abundance (%) visualization mode and in an Absolute Abundance (mg) visualization mode, the latter taking venom yields into account. The curated venomics data for all snake species included in this database is also made available in a downloadable Excel file format. The Snake Venomics Display toolbox represents a simple way of handling snake venomics data, which is better suited for large data sets of venom compositions from multiple snake species.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Keywords:  Snake venom; Snake venomics; Snake venomics display; Venom proteomics; Venomics; Visualization of venomics data

Mesh:

Substances:

Year:  2018        PMID: 30053438     DOI: 10.1016/j.toxicon.2018.07.019

Source DB:  PubMed          Journal:  Toxicon        ISSN: 0041-0101            Impact factor:   3.033


  5 in total

1.  From molecules to macroevolution: Venom as a model system for evolutionary biology across levels of life.

Authors:  Kevin Arbuckle
Journal:  Toxicon X       Date:  2020-04-18

2.  Biosynthetic Oligoclonal Antivenom (BOA) for Snakebite and Next-Generation Treatments for Snakebite Victims.

Authors:  R Manjunatha Kini; Sachdev S Sidhu; Andreas Hougaard Laustsen
Journal:  Toxins (Basel)       Date:  2018-12-13       Impact factor: 4.546

3.  Protease Activity Profiling of Snake Venoms Using High-Throughput Peptide Screening.

Authors:  Konstantinos Kalogeropoulos; Andreas Frederik Treschow; Ulrich Auf dem Keller; Teresa Escalante; Alexandra Rucavado; José María Gutiérrez; Andreas Hougaard Laustsen; Christopher T Workman
Journal:  Toxins (Basel)       Date:  2019-03-19       Impact factor: 4.546

Review 4.  Phylogenetic Comparative Methods can Provide Important Insights into the Evolution of Toxic Weaponry.

Authors:  Kevin Arbuckle
Journal:  Toxins (Basel)       Date:  2018-12-05       Impact factor: 4.546

Review 5.  Old World Vipers-A Review about Snake Venom Proteomics of Viperinae and Their Variations.

Authors:  Maik Damm; Benjamin-Florian Hempel; Roderich D Süssmuth
Journal:  Toxins (Basel)       Date:  2021-06-17       Impact factor: 4.546

  5 in total

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