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Literature DB >> 30042544

The hackers teaching old DNA sequencers new tricks.

Jeffrey M Perkel.

Abstract

Entities: Chemical

Keywords: Biochemistry; Biophysics; Genomics; Microscopy; Technology

Mesh：

Year: 2018 PMID： 30042544 DOI： 10.1038/d41586-018-05769-8

Source DB: PubMed Journal: Nature ISSN： 0028-0836 Impact factor: 49.962

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8 in total

1. Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis.

Authors: Timothy E Sweeney; Lindsay Braviak; Cristina M Tato; Purvesh Khatri
Journal: Lancet Respir Med Date: 2016-02-20 Impact factor: 30.700

2. High-throughput biochemical profiling reveals sequence determinants of dCas9 off-target binding and unbinding.

Authors: Evan A Boyle; Johan O L Andreasson; Lauren M Chircus; Samuel H Sternberg; Michelle J Wu; Chantal K Guegler; Jennifer A Doudna; William J Greenleaf
Journal: Proc Natl Acad Sci U S A Date: 2017-05-11 Impact factor: 11.205

3. Massively Parallel Biophysical Analysis of CRISPR-Cas Complexes on Next Generation Sequencing Chips.

Authors: Cheulhee Jung; John A Hawkins; Stephen K Jones; Yibei Xiao; James R Rybarski; Kaylee E Dillard; Jeffrey Hussmann; Fatema A Saifuddin; Cagri A Savran; Andrew D Ellington; Ailong Ke; William H Press; Ilya J Finkelstein
Journal: Cell Date: 2017-06-29 Impact factor: 41.582

4. Direct measurement of DNA affinity landscapes on a high-throughput sequencing instrument.

Authors: Razvan Nutiu; Robin C Friedman; Shujun Luo; Irina Khrebtukova; David Silva; Robin Li; Lu Zhang; Gary P Schroth; Christopher B Burge
Journal: Nat Biotechnol Date: 2011-06-26 Impact factor: 54.908

5. Peptide Synthesis on a Next-Generation DNA Sequencing Platform.

Authors: Nina Svensen; Olve B Peersen; Samie R Jaffrey
Journal: Chembiochem Date: 2016-07-06 Impact factor: 3.164

6. Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes.

Authors: Jason D Buenrostro; Carlos L Araya; Lauren M Chircus; Curtis J Layton; Howard Y Chang; Michael P Snyder; William J Greenleaf
Journal: Nat Biotechnol Date: 2014-04-13 Impact factor: 54.908

7. Poly(A)-tail profiling reveals an embryonic switch in translational control.

Authors: Alexander O Subtelny; Stephen W Eichhorn; Grace R Chen; Hazel Sive; David P Bartel
Journal: Nature Date: 2014-01-29 Impact factor: 49.962

8 in total

4 in total

The hackers teaching old DNA sequencers new tricks.

1. Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis.

2. High-throughput biochemical profiling reveals sequence determinants of dCas9 off-target binding and unbinding.

3. Massively Parallel Biophysical Analysis of CRISPR-Cas Complexes on Next Generation Sequencing Chips.

4. Direct measurement of DNA affinity landscapes on a high-throughput sequencing instrument.

5. Peptide Synthesis on a Next-Generation DNA Sequencing Platform.

6. Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes.

7. Poly(A)-tail profiling reveals an embryonic switch in translational control.

1. micrIO: an open-source autosampler and fraction collector for automated microfluidic input-output.

Review 2. High throughput approaches to study RNA-protein interactions in vitro.

3. Development of a sequencing system for spatial decoding of DNA barcode molecules at single-molecule resolution.

4. An open source toolkit for repurposing Illumina sequencing systems as versatile fluidics and imaging platforms.