Literature DB >> 3003997

Three-dimensional reconstruction of the shape of human wart virus using spatial correlations.

Z Kam, I Gafni.   

Abstract

Correlation averaging was used to enhance the three-dimensional spherical harmonic expansion of human wart virus particles from randomly-oriented negatively-stained electron microscopic images in holey grids. The reconstruction reveals the coat protein arrangement and variations in stain distribution inside the virus core. Selection rules imposed by the spherical symmetry on the harmonic expansion component are obtained indeed for angular momenta, l, lower than 11, but cannot be shown for l greater than or equal to 11, due to non-spherical distortions of about 1/11th of the radius of the virus. This prevents us from resolving fine details of packing of the protomers on the surface lattice. Distribution of stain inside the virus core, and its spherical symmetry, is reconstructed and may be related to nucleic acids and core protein structure.

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Year:  1985        PMID: 3003997     DOI: 10.1016/0304-3991(85)90092-0

Source DB:  PubMed          Journal:  Ultramicroscopy        ISSN: 0304-3991            Impact factor:   2.689


  5 in total

1.  Single-particle structure determination by correlations of snapshot X-ray diffraction patterns.

Authors:  D Starodub; A Aquila; S Bajt; M Barthelmess; A Barty; C Bostedt; J D Bozek; N Coppola; R B Doak; S W Epp; B Erk; L Foucar; L Gumprecht; C Y Hampton; A Hartmann; R Hartmann; P Holl; S Kassemeyer; N Kimmel; H Laksmono; M Liang; N D Loh; L Lomb; A V Martin; K Nass; C Reich; D Rolles; B Rudek; A Rudenko; J Schulz; R L Shoeman; R G Sierra; H Soltau; J Steinbrener; F Stellato; S Stern; G Weidenspointner; M Frank; J Ullrich; L Strüder; I Schlichting; H N Chapman; J C H Spence; M J Bogan
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

2.  Two-dimensional structure from random multiparticle X-ray scattering images using cross-correlations.

Authors:  B Pedrini; A Menzel; M Guizar-Sicairos; V A Guzenko; S Gorelick; C David; B D Patterson; R Abela
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

3.  An introduction to maximum-likelihood methods in cryo-EM.

Authors:  Fred J Sigworth; Peter C Doerschuk; Jose-Maria Carazo; Sjors H W Scheres
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

4.  Model-independent particle species disentanglement by X-ray cross-correlation scattering.

Authors:  B Pedrini; A Menzel; V A Guzenko; C David; R Abela; C Gutt
Journal:  Sci Rep       Date:  2017-04-04       Impact factor: 4.379

5.  Observation of correlated X-ray scattering at atomic resolution.

Authors:  Derek Mendez; Thomas J Lane; Jongmin Sung; Jonas Sellberg; Clément Levard; Herschel Watkins; Aina E Cohen; Michael Soltis; Shirley Sutton; James Spudich; Vijay Pande; Daniel Ratner; Sebastian Doniach
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

  5 in total

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