Literature DB >> 30039465

The plastid genome as a chassis for synthetic biology-enabled metabolic engineering: players in gene expression.

Heidi S Schindel1, Agnieszka A Piatek2, C Neal Stewart3,4, Scott C Lenaghan5,6,7.   

Abstract

Owing to its small size, prokaryotic-like molecular genetics, and potential for very high transgene expression, the plastid genome (plastome) is an attractive plant synthetic biology chassis for metabolic engineering. The plastome exists as a homogenous, compact, multicopy genome within multiple-specialized differentiated plastid compartments. Because of this multiplicity, transgenes can be highly expressed. For coordinated gene expression, it is the prokaryotic molecular genetics that is an especially attractive feature. Multiple genes in a metabolic pathway can be expressed in a series of operons, which are regulated at the transcriptional and translational levels with cross talk from the plant's nuclear genome. Key features of each regulatory level are reviewed, as well as some examples of plastome-enabled metabolic engineering. We also speculate about the transformative future of plastid-based synthetic biology to enable metabolic engineering in plants as well as the problems that must be solved before routine plastome-enabled synthetic circuits can be installed.

Keywords:  Genomic cross talk; Metabolic engineering; Promoters; Synthetic biology; UTRs

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Substances:

Year:  2018        PMID: 30039465     DOI: 10.1007/s00299-018-2323-4

Source DB:  PubMed          Journal:  Plant Cell Rep        ISSN: 0721-7714            Impact factor:   4.570


  87 in total

Review 1.  Molecular strategies for gene containment in transgenic crops.

Authors:  Henry Daniell
Journal:  Nat Biotechnol       Date:  2002-06       Impact factor: 54.908

2.  Translation of psbC mRNAs starts from the downstream GUG, not the upstream AUG, and requires the extended Shine-Dalgarno sequence in tobacco chloroplasts.

Authors:  Hiroshi Kuroda; Haruka Suzuki; Takahiro Kusumegi; Tetsuro Hirose; Yasushi Yukawa; Masahiro Sugiura
Journal:  Plant Cell Physiol       Date:  2007-07-29       Impact factor: 4.927

Review 3.  The dynamics of photosynthesis.

Authors:  Stephan Eberhard; Giovanni Finazzi; Francis-André Wollman
Journal:  Annu Rev Genet       Date:  2008       Impact factor: 16.830

4.  In vitro characterization of the tobacco rpoB promoter reveals a core sequence motif conserved between phage-type plastid and plant mitochondrial promoters.

Authors:  K Liere; P Maliga
Journal:  EMBO J       Date:  1999-01-04       Impact factor: 11.598

5.  Low-cost production of proinsulin in tobacco and lettuce chloroplasts for injectable or oral delivery of functional insulin and C-peptide.

Authors:  Diane Boyhan; Henry Daniell
Journal:  Plant Biotechnol J       Date:  2010-12-08       Impact factor: 9.803

6.  The multiple-stress responsive plastid sigma factor, SIG5, directs activation of the psbD blue light-responsive promoter (BLRP) in Arabidopsis thaliana.

Authors:  Akitomo Nagashima; Mitsumasa Hanaoka; Toshiharu Shikanai; Makoto Fujiwara; Kengo Kanamaru; Hideo Takahashi; Kan Tanaka
Journal:  Plant Cell Physiol       Date:  2004-04       Impact factor: 4.927

7.  Field production and functional evaluation of chloroplast-derived interferon-alpha2b.

Authors:  Philip A Arlen; Regina Falconer; Sri Cherukumilli; Amy Cole; Alexander M Cole; Karen K Oishi; Henry Daniell
Journal:  Plant Biotechnol J       Date:  2007-05-09       Impact factor: 9.803

8.  Plastid transcriptomics and translatomics of tomato fruit development and chloroplast-to-chromoplast differentiation: chromoplast gene expression largely serves the production of a single protein.

Authors:  Sabine Kahlau; Ralph Bock
Journal:  Plant Cell       Date:  2008-04-25       Impact factor: 11.277

9.  SIG1, a sigma factor for the chloroplast RNA polymerase, differently associates with multiple DNA regions in the chloroplast chromosomes in vivo.

Authors:  Mitsumasa Hanaoka; Maiko Kato; Misato Anma; Kan Tanaka
Journal:  Int J Mol Sci       Date:  2012-09-25       Impact factor: 5.923

10.  Tobacco BY-2 cell-free lysate: an alternative and highly-productive plant-based in vitro translation system.

Authors:  Matthias Buntru; Simon Vogel; Holger Spiegel; Stefan Schillberg
Journal:  BMC Biotechnol       Date:  2014-05-03       Impact factor: 2.563

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  6 in total

1.  MoChlo: A Versatile, Modular Cloning Toolbox for Chloroplast Biotechnology.

Authors:  Alessandro Occhialini; Agnieszka A Piatek; Alexander C Pfotenhauer; Taylor P Frazier; C Neal Stewart; Scott C Lenaghan
Journal:  Plant Physiol       Date:  2019-01-24       Impact factor: 8.340

2.  Plant metabolic engineering in the synthetic biology era: plant chassis selection.

Authors:  C Neal Stewart; Nicola Patron; Andrew D Hanson; Joseph M Jez
Journal:  Plant Cell Rep       Date:  2018-09-08       Impact factor: 4.570

3.  Cell-penetrating peptide for targeted macromolecule delivery into plant chloroplasts.

Authors:  Vivek Kumar; Archana Chugh
Journal:  Appl Microbiol Biotechnol       Date:  2022-07-12       Impact factor: 5.560

4.  Generation, analysis, and transformation of macro-chloroplast Potato (Solanum tuberosum) lines for chloroplast biotechnology.

Authors:  Alessandro Occhialini; Alexander C Pfotenhauer; Taylor P Frazier; Li Li; Stacee A Harbison; Andrew J Lail; Zachary Mebane; Agnieszka A Piatek; Stephen B Rigoulot; Henry Daniell; C Neal Stewart; Scott C Lenaghan
Journal:  Sci Rep       Date:  2020-12-03       Impact factor: 4.379

Review 5.  The Algal Chloroplast as a Testbed for Synthetic Biology Designs Aimed at Radically Rewiring Plant Metabolism.

Authors:  Harry O Jackson; Henry N Taunt; Pawel M Mordaka; Alison G Smith; Saul Purton
Journal:  Front Plant Sci       Date:  2021-09-24       Impact factor: 5.753

Review 6.  Advances in Metabolomics-Driven Diagnostic Breeding and Crop Improvement.

Authors:  Ali Razzaq; David S Wishart; Shabir Hussain Wani; Muhammad Khalid Hameed; Muhammad Mubin; Fozia Saleem
Journal:  Metabolites       Date:  2022-06-02
  6 in total

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