Literature DB >> 30039155

Frequency of Loss of Function Variants in LRRK2 in Parkinson Disease.

Cornelis Blauwendraat1,2, Xylena Reed2, Demis A Kia3, Ziv Gan-Or4,5, Suzanne Lesage6, Lasse Pihlstrøm7, Rita Guerreiro8,9,10, J Raphael Gibbs2, Marya Sabir1, Sarah Ahmed1, Jinhui Ding2, Roy N Alcalay11,12, Sharon Hassin-Baer13,14, Alan M Pittman3, Janet Brooks2, Connor Edsall2, Dena G Hernandez2, Sun Ju Chung15, Stefano Goldwurm16,17, Mathias Toft18, Claudia Schulte19, Jose Bras8,9,10, Nicholas W Wood3, Alexis Brice6, Huw R Morris20, Sonja W Scholz1,21, Mike A Nalls2,22, Andrew B Singleton2, Mark R Cookson2.   

Abstract

Importance: Pathogenic variants in LRRK2 are a relatively common genetic cause of Parkinson disease (PD). Currently, the molecular mechanism underlying disease is unknown, and gain and loss of function (LOF) models of pathogenesis have been postulated. LRRK2 variants are reported to result in enhanced phosphorylation of substrates and increased cell death. However, the double knockout of Lrrk2 and its homologue Lrrk1 results in neurodegeneration in a mouse model, suggesting that disease may occur by LOF. Because LRRK2 inhibitors are currently in development as potential disease-modifying treatments in PD, it is critical to determine whether LOF variants in LRRK2 increase or decrease the risk of PD. Objective: To determine whether LRRK1 and LRRK2 LOF variants contribute to the risk of developing PD. Design, Setting, and Participants: To determine the prevailing mechanism of LRRK2-mediated disease in human populations, next-generation sequencing data from a large case-control cohort (>23 000 individuals) was analyzed for LOF variants in LRRK1 and LRRK2. Data were generated at 5 different sites and 5 different data sets, including cases with clinically diagnosed PD and neurologically normal control individuals. Data were collected from 2012 through 2017. Main Outcomes and Measures: Frequencies of LRRK1 and LRRK2 LOF variants present in the general population and compared between cases and controls.
Results: Among 11 095 cases with PD and 12 615 controls, LRRK1 LOF variants were identified in 0.205% of cases and 0.139% of controls (odds ratio, 1.48; SE, 0.571; 95% CI, 0.45-4.44; P = .49) and LRRK2 LOF variants were found in 0.117% of cases and 0.087% of controls (odds ratio, 1.48; SE, 0.431; 95% CI, 0.63-3.50; P = .36). All association tests suggested lack of association between LRRK1 or LRRK2 variants and PD. Further analysis of lymphoblastoid cell lines from several heterozygous LOF variant carriers found that, as expected, LRRK2 protein levels are reduced by approximately half compared with wild-type alleles. Conclusions and Relevance: Together these findings indicate that haploinsufficiency of LRRK1 or LRRK2 is neither a cause of nor protective against PD. Furthermore, these results suggest that kinase inhibition or allele-specific targeting of mutant LRRK2 remain viable therapeutic strategies in PD.

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Year:  2018        PMID: 30039155      PMCID: PMC6248108          DOI: 10.1001/jamaneurol.2018.1885

Source DB:  PubMed          Journal:  JAMA Neurol        ISSN: 2168-6149            Impact factor:   18.302


  17 in total

1.  LRRK2 G2019S as a cause of Parkinson's disease in North African Arabs.

Authors:  Suzanne Lesage; Alexandra Dürr; Meriem Tazir; Ebba Lohmann; Anne-Louise Leutenegger; Sabine Janin; Pierre Pollak; Alexis Brice
Journal:  N Engl J Med       Date:  2006-01-26       Impact factor: 91.245

2.  LRRK2 G2019S as a cause of Parkinson's disease in Ashkenazi Jews.

Authors:  Laurie J Ozelius; Geetha Senthil; Rachel Saunders-Pullman; Erin Ohmann; Amanda Deligtisch; Michele Tagliati; Ann L Hunt; Christine Klein; Brian Henick; Susan M Hailpern; Richard B Lipton; Jeannie Soto-Valencia; Neil Risch; Susan B Bressman
Journal:  N Engl J Med       Date:  2006-01-26       Impact factor: 91.245

Review 3.  The Parkinson's complex: parkinsonism is just the tip of the iceberg.

Authors:  J William Langston
Journal:  Ann Neurol       Date:  2006-04       Impact factor: 10.422

4.  MLi-2, a Potent, Selective, and Centrally Active Compound for Exploring the Therapeutic Potential and Safety of LRRK2 Kinase Inhibition.

Authors:  Matthew J Fell; Christian Mirescu; Kallol Basu; Boonlert Cheewatrakoolpong; Duane E DeMong; J Michael Ellis; Lynn A Hyde; Yinghui Lin; Carrie G Markgraf; Hong Mei; Michael Miller; Frederique M Poulet; Jack D Scott; Michelle D Smith; Zhizhang Yin; Xiaoping Zhou; Eric M Parker; Matthew E Kennedy; John A Morrow
Journal:  J Pharmacol Exp Ther       Date:  2015-09-25       Impact factor: 4.030

5.  Effect of selective LRRK2 kinase inhibition on nonhuman primate lung.

Authors:  Reina N Fuji; Michael Flagella; Miriam Baca; Marco A S Baptista; Jens Brodbeck; Bryan K Chan; Brian K Fiske; Lee Honigberg; Adrian M Jubb; Paula Katavolos; Donna W Lee; Sock-Cheng Lewin-Koh; Tori Lin; Xingrong Liu; Shannon Liu; Joseph P Lyssikatos; Jennifer O'Mahony; Mike Reichelt; Merone Roose-Girma; Zejuan Sheng; Todd Sherer; Ashley Smith; Margaret Solon; Zachary K Sweeney; Jacqueline Tarrant; Alison Urkowitz; Søren Warming; Murat Yaylaoglu; Shuo Zhang; Haitao Zhu; Anthony A Estrada; Ryan J Watts
Journal:  Sci Transl Med       Date:  2015-02-04       Impact factor: 17.956

6.  The therapeutic potential of LRRK2 and alpha-synuclein in Parkinson's disease.

Authors:  Saurabh Sen; Andrew B West
Journal:  Antioxid Redox Signal       Date:  2009-09       Impact factor: 8.401

7.  Efficient allele-specific targeting of LRRK2 R1441 mutations mediated by RNAi.

Authors:  Laura de Yñigo-Mojado; Itziar Martín-Ruíz; James D Sutherland
Journal:  PLoS One       Date:  2011-06-21       Impact factor: 3.240

8.  RVTESTS: an efficient and comprehensive tool for rare variant association analysis using sequence data.

Authors:  Xiaowei Zhan; Youna Hu; Bingshan Li; Goncalo R Abecasis; Dajiang J Liu
Journal:  Bioinformatics       Date:  2016-02-15       Impact factor: 6.937

Review 9.  LRRK2 at the interface of autophagosomes, endosomes and lysosomes.

Authors:  Dorien A Roosen; Mark R Cookson
Journal:  Mol Neurodegener       Date:  2016-12-07       Impact factor: 14.195

10.  Age-Dependent Dopaminergic Neurodegeneration and Impairment of the Autophagy-Lysosomal Pathway in LRRK-Deficient Mice.

Authors:  Emilie Giaime; Youren Tong; Lisa K Wagner; Yang Yuan; Guodong Huang; Jie Shen
Journal:  Neuron       Date:  2017-10-19       Impact factor: 17.173

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  35 in total

Review 1.  LRRK2 links genetic and sporadic Parkinson's disease.

Authors:  Jillian H Kluss; Adamantios Mamais; Mark R Cookson
Journal:  Biochem Soc Trans       Date:  2019-03-05       Impact factor: 5.407

Review 2.  LRRK2 and idiopathic Parkinson's disease.

Authors:  Emily M Rocha; Matthew T Keeney; Roberto Di Maio; Briana R De Miranda; J Timothy Greenamyre
Journal:  Trends Neurosci       Date:  2022-01-04       Impact factor: 13.837

3.  Comprehensive assessment of PINK1 variants in Parkinson's disease.

Authors:  Lynne Krohn; Francis P Grenn; Mary B Makarious; Jonggeol Jeffrey Kim; Sara Bandres-Ciga; Dorien A Roosen; Ziv Gan-Or; Mike A Nalls; Andrew B Singleton; Cornelis Blauwendraat
Journal:  Neurobiol Aging       Date:  2020-03-10       Impact factor: 4.673

Review 4.  Endosomal sorting pathways in the pathogenesis of Parkinson's disease.

Authors:  Lindsey A Cunningham; Darren J Moore
Journal:  Prog Brain Res       Date:  2020-03-16       Impact factor: 2.453

Review 5.  The genetic architecture of Parkinson's disease.

Authors:  Cornelis Blauwendraat; Mike A Nalls; Andrew B Singleton
Journal:  Lancet Neurol       Date:  2019-09-11       Impact factor: 44.182

6.  Identification of LRRK2 missense variants in the accelerating medicines partnership Parkinson's disease cohort.

Authors:  Nicole Bryant; Nicole Malpeli; Julia Ziaee; Cornelis Blauwendraat; Zhiyong Liu; Andrew B West
Journal:  Hum Mol Genet       Date:  2021-04-30       Impact factor: 6.150

Review 7.  Mind the Gap: LRRK2 Phenotypes in the Clinic vs. in Patient Cells.

Authors:  Liesel Goveas; Eugénie Mutez; Marie-Christine Chartier-Harlin; Jean-Marc Taymans
Journal:  Cells       Date:  2021-04-22       Impact factor: 6.600

8.  In silico comparative analysis of LRRK2 interactomes from brain, kidney and lung.

Authors:  Amrita Verma; Kirsten Ebanks; Chi-Yee Fok; Patrick A Lewis; Conceicao Bettencourt; Rina Bandopadhyay
Journal:  Brain Res       Date:  2021-04-26       Impact factor: 3.252

9.  LRRK2 Loss-of-Function Variants in Patients with Rare Diseases: No Evidence for a Phenotypic Impact.

Authors:  Christian Beetz; Ana Westenberger; Ruslan Al-Ali; Najim Ameziane; Nadia Alhashmi; Rose-Mary Boustany; Fuad Al Mutairi; Majid Alfadhel; Zuhair Al-Hassnan; Moenaldeen AlSayed; Krishna K Kandaswamy; Omid Paknia; Volha Skrahina; Arndt Rolfs; Peter Bauer
Journal:  Mov Disord       Date:  2021-01-12       Impact factor: 10.338

10.  Genetic modifiers of risk and age at onset in GBA associated Parkinson's disease and Lewy body dementia.

Authors:  Cornelis Blauwendraat; Xylena Reed; Lynne Krohn; Karl Heilbron; Sara Bandres-Ciga; Manuela Tan; J Raphael Gibbs; Dena G Hernandez; Ravindran Kumaran; Rebekah Langston; Luis Bonet-Ponce; Roy N Alcalay; Sharon Hassin-Baer; Lior Greenbaum; Hirotaka Iwaki; Hampton L Leonard; Francis P Grenn; Jennifer A Ruskey; Marya Sabir; Sarah Ahmed; Mary B Makarious; Lasse Pihlstrøm; Mathias Toft; Jacobus J van Hilten; Johan Marinus; Claudia Schulte; Kathrin Brockmann; Manu Sharma; Ari Siitonen; Kari Majamaa; Johanna Eerola-Rautio; Pentti J Tienari; Alexander Pantelyat; Argye E Hillis; Ted M Dawson; Liana S Rosenthal; Marilyn S Albert; Susan M Resnick; Luigi Ferrucci; Christopher M Morris; Olga Pletnikova; Juan Troncoso; Donald Grosset; Suzanne Lesage; Jean-Christophe Corvol; Alexis Brice; Alastair J Noyce; Eliezer Masliah; Nick Wood; John Hardy; Lisa M Shulman; Joseph Jankovic; Joshua M Shulman; Peter Heutink; Thomas Gasser; Paul Cannon; Sonja W Scholz; Huw Morris; Mark R Cookson; Mike A Nalls; Ziv Gan-Or; Andrew B Singleton
Journal:  Brain       Date:  2020-01-01       Impact factor: 13.501

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