Literature DB >> 3003677

A program package applicable to the detection of overlaps between restriction maps.

P S Neumaier.   

Abstract

A computer program package for the storage, change, and comparison of restriction maps is described. The programs are intended to detect overlaps between relatively short (about 10-40 kb; abbreviations ref.2) maps and to merge the overlapping fragments into large restriction maps. They run on a 16-bit-microcomputer with limited memory and addressing capability. Due to the restricted reliability of restriction maps compared with DNA sequence data a particular storage method was used. The source code of the programs is freely available (+).

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Year:  1986        PMID： 3003677      PMCID： PMC339418          DOI： 10.1093/nar/14.1.351

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  7 in total

1.  Organization and evolution of a gene cluster for human immunoglobulin variable regions of the kappa type.

Authors:  M Pech; H R Jaenichen; H D Pohlenz; P S Neumaier; H G Klobeck; H G Zachau
Journal:  J Mol Biol       Date:  1984-06-25       Impact factor: 5.469

Review 2.  Analysis of biological sequences on small computers.

Authors:  L J Korn; C Queen
Journal:  DNA       Date:  1984-12

3.  KLONER; a computer program to simulate recombinant DNA strategies by restriction map manipulation.

Authors:  P R Caron
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

4.  PLASMAP: an interactive computational tool for storage, retrieval and device-independent graphic display of conventional restriction maps.

Authors:  B N Stone; G L Griesinger; J L Modelevsky
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

5.  Algorithms for restriction map comparisons.

Authors:  M S Waterman; T F Smith; H L Katcher
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

6.  [How do antibodies form? (9th Fritz Lipmann Lecture)].

Authors:  H G Zachau; M Pech; H G Klobeck; H D Pohlenz; B Straubinger; F G Falkner
Journal:  Hoppe Seylers Z Physiol Chem       Date:  1984-12

7.  Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing.

Authors:  R Staden
Journal:  Nucleic Acids Res       Date:  1982-08-11       Impact factor: 16.971
  7 in total
  2 in total

1.  FRAGMAP--a program for restriction site map comparison.

Authors:  P D Gershon; N J Knowles
Journal:  Nucleic Acids Res       Date:  1988-03-11       Impact factor: 16.971

2.  Alignment of Escherichia coli K12 DNA sequences to a genomic restriction map.

Authors:  K E Rudd; W Miller; J Ostell; D A Benson
Journal:  Nucleic Acids Res       Date:  1990-01-25       Impact factor: 16.971
  2 in total

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