Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 MULTAN: a program to align multiple DNA sequences.

Literature DB >> 3003672

MULTAN: a program to align multiple DNA sequences.

Abstract

I describe a computer program which can align a large number of nucleic acid sequences with one another. The program uses an heuristic, iterative algorithm which has been tested extensively, and is found to produce useful alignments of a variety of sequence families. The algorithm is fast enough to be practical for the analysis of large number of sequences, and is implemented in a program which contains a variety of other functions to facilitate the analysis of the aligned result.

Mesh：

Substances：

Year: 1986 PMID： 3003672 PMCID： PMC339364 DOI： 10.1093/nar/14.1.159

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

10 in total

1. A computer aided oligonucleotide analysis provides a model sequence for RNA polymerase-promoter recognition in E.coli.

Authors: G E Scherer; M D Walkinshaw; S Arnott
Journal: Nucleic Acids Res Date: 1978-10 Impact factor: 16.971

2. Simultaneous comparison of three protein sequences.

Authors: M Murata; J S Richardson; J L Sussman
Journal: Proc Natl Acad Sci U S A Date: 1985-05 Impact factor: 11.205

3. Pattern recognition in several sequences: consensus and alignment.

Authors: M S Waterman; R Arratia; D J Galas
Journal: Bull Math Biol Date: 1984 Impact factor: 1.758

4. GEL, a DNA sequencing project management system.

Authors: J Clayton; L Kedes
Journal: Nucleic Acids Res Date: 1982-01-11 Impact factor: 16.971

5. SEQ: a nucleotide sequence analysis and recombination system.

Authors: D L Brutlag; J Clayton; P Friedland; L H Kedes
Journal: Nucleic Acids Res Date: 1982-01-11 Impact factor: 16.971

6. Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications.

Authors: W H Li; C I Wu; C C Luo
Journal: J Mol Evol Date: 1984 Impact factor: 2.395

7. Sequencing end-labeled DNA with base-specific chemical cleavages.

Authors: A M Maxam; W Gilbert
Journal: Methods Enzymol Date: 1980 Impact factor: 1.600

8. Comparative biosequence metrics.

Authors: T F Smith; M S Waterman; W M Fitch
Journal: J Mol Evol Date: 1981 Impact factor: 2.395

9. Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing.

Authors: R Staden
Journal: Nucleic Acids Res Date: 1982-08-11 Impact factor: 16.971

10. Rapid similarity searches of nucleic acid and protein data banks.

Authors: W J Wilbur; D J Lipman
Journal: Proc Natl Acad Sci U S A Date: 1983-02 Impact factor: 11.205

10 in total

18 in total

9. Unusual structure, evolutionary conservation of non-coding sequences and numerous pseudogenes characterize the human H3.3 histone multigene family.

Authors: D Wells; D Hoffman; L Kedes
Journal: Nucleic Acids Res Date: 1987-04-10 Impact factor: 16.971

10. Multiple sequence alignment with hierarchical clustering.

Authors: F Corpet
Journal: Nucleic Acids Res Date: 1988-11-25 Impact factor: 16.971

MULTAN: a program to align multiple DNA sequences.

1. A computer aided oligonucleotide analysis provides a model sequence for RNA polymerase-promoter recognition in E.coli.

2. Simultaneous comparison of three protein sequences.

3. Pattern recognition in several sequences: consensus and alignment.

4. GEL, a DNA sequencing project management system.

5. SEQ: a nucleotide sequence analysis and recombination system.

6. Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications.

7. Sequencing end-labeled DNA with base-specific chemical cleavages.

8. Comparative biosequence metrics.

9. Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing.

10. Rapid similarity searches of nucleic acid and protein data banks.

1. Consensus sequences based on plurality rule.

2. Critical comparison of consensus methods for molecular sequences.

3. A comprehensive compilation and alignment of histones and histone genes.

4. A survey of multiple sequence comparison methods.

5. A multiple sequence comparison method.

6. Application of a new method of pattern recognition in DNA sequence analysis: a study of E. coli promoters.

7. Codon usage in histone gene families of higher eukaryotes reflects functional rather than phylogenetic relationships.

8. The multiple origins of human Alu sequences.

9. Unusual structure, evolutionary conservation of non-coding sequences and numerous pseudogenes characterize the human H3.3 histone multigene family.

10. Multiple sequence alignment with hierarchical clustering.