Literature DB >> 30035774

Digital PCR for Quantifying Circulating MicroRNAs in Acute Myocardial Infarction and Cardiovascular Disease.

Louise Benning1, Samuel Robinson2, Marie Follo3, Lukas Andreas Heger1, Daniela Stallmann1, Daniel Duerschmied1, Christoph Bode1, Ingo Ahrens4, Marcus Hortmann5.   

Abstract

Circulating serum microRNAs (miRNAs) have shown promise as biomarkers for the cardiovascular disease and acute myocardial infarction (AMI), being released from the cardiovascular cells into the circulation. Circulating miRNAs are highly stable and can be quantified. The quantitative expression of specific miRNAs can be linked to the pathology, and some miRNAs show high tissue and disease specificity. Finding novel biomarkers for cardiovascular diseases is of importance for medical research. Quite recently, digital polymerase chain reaction (dPCR) has been invented. dPCR, combined with fluorescent hydrolysis probes, enables specific direct absolute quantification. dPCR exhibits superior technical qualities, including a low variability, high linearity, and high sensitivity compared to the quantitative polymerase chain reaction (qPCR). Thus, dPCR is a more accurate and reproducible method for directly quantifying miRNAs, particularly for the use in large multi-center cardiovascular clinical trials. In this publication, we describe how to effectively perform digital PCR in order to assess the absolute copy number in serum samples.

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Year:  2018        PMID: 30035774      PMCID: PMC6102040          DOI: 10.3791/57950

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  17 in total

1.  Circulating microRNAs: novel biomarkers for cardiovascular diseases?

Authors:  Stefanie Dimmeler; Andreas M Zeiher
Journal:  Eur Heart J       Date:  2010-07-06       Impact factor: 29.983

Review 2.  Circulating microRNAs: novel biomarkers and extracellular communicators in cardiovascular disease?

Authors:  Esther E Creemers; Anke J Tijsen; Yigal M Pinto
Journal:  Circ Res       Date:  2012-02-03       Impact factor: 17.367

3.  Diagnostic potential of circulating miR-499-5p in elderly patients with acute non ST-elevation myocardial infarction.

Authors:  Fabiola Olivieri; Roberto Antonicelli; Maria Lorenzi; Yuri D'Alessandra; Raffaella Lazzarini; Gabriele Santini; Liana Spazzafumo; Rosamaria Lisa; Lucia La Sala; Roberta Galeazzi; Rina Recchioni; Roberto Testa; Giulio Pompilio; Maurizio C Capogrossi; Antonio Domenico Procopio
Journal:  Int J Cardiol       Date:  2012-02-12       Impact factor: 4.164

4.  Circulating microRNAs are new and sensitive biomarkers of myocardial infarction.

Authors:  Yuri D'Alessandra; Paolo Devanna; Federica Limana; Stefania Straino; Anna Di Carlo; Paola G Brambilla; Mara Rubino; Maria Cristina Carena; Liana Spazzafumo; Marco De Simone; Barbara Micheli; Paolo Biglioli; Felice Achilli; Fabio Martelli; Stefano Maggiolini; Giancarlo Marenzi; Giulio Pompilio; Maurizio C Capogrossi
Journal:  Eur Heart J       Date:  2010-06-09       Impact factor: 29.983

Review 5.  Data Normalization Strategies for MicroRNA Quantification.

Authors:  Heidi Schwarzenbach; Andreia Machado da Silva; George Calin; Klaus Pantel
Journal:  Clin Chem       Date:  2015-09-25       Impact factor: 8.327

6.  High-throughput droplet digital PCR system for absolute quantitation of DNA copy number.

Authors:  Benjamin J Hindson; Kevin D Ness; Donald A Masquelier; Phillip Belgrader; Nicholas J Heredia; Anthony J Makarewicz; Isaac J Bright; Michael Y Lucero; Amy L Hiddessen; Tina C Legler; Tyler K Kitano; Michael R Hodel; Jonathan F Petersen; Paul W Wyatt; Erin R Steenblock; Pallavi H Shah; Luc J Bousse; Camille B Troup; Jeffrey C Mellen; Dean K Wittmann; Nicholas G Erndt; Thomas H Cauley; Ryan T Koehler; Austin P So; Simant Dube; Klint A Rose; Luz Montesclaros; Shenglong Wang; David P Stumbo; Shawn P Hodges; Steven Romine; Fred P Milanovich; Helen E White; John F Regan; George A Karlin-Neumann; Christopher M Hindson; Serge Saxonov; Bill W Colston
Journal:  Anal Chem       Date:  2011-10-28       Impact factor: 6.986

7.  Absolute quantification by droplet digital PCR versus analog real-time PCR.

Authors:  Christopher M Hindson; John R Chevillet; Hilary A Briggs; Emily N Gallichotte; Ingrid K Ruf; Benjamin J Hindson; Robert L Vessella; Muneesh Tewari
Journal:  Nat Methods       Date:  2013-09-01       Impact factor: 28.547

Review 8.  Identifying circulating microRNAs as biomarkers of cardiovascular disease: a systematic review.

Authors:  Rokas Navickas; Diane Gal; Aleksandras Laucevičius; Agnė Taparauskaitė; Monika Zdanytė; Paul Holvoet
Journal:  Cardiovasc Res       Date:  2016-06-29       Impact factor: 10.787

9.  Droplet Digital PCR versus qPCR for gene expression analysis with low abundant targets: from variable nonsense to publication quality data.

Authors:  Sean C Taylor; Genevieve Laperriere; Hugo Germain
Journal:  Sci Rep       Date:  2017-05-25       Impact factor: 4.379

10.  Methods to determine limit of detection and limit of quantification in quantitative real-time PCR (qPCR).

Authors:  Amin Forootan; Robert Sjöback; Jens Björkman; Björn Sjögreen; Lucas Linz; Mikael Kubista
Journal:  Biomol Detect Quantif       Date:  2017-04-29
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  1 in total

1.  Circulating miR-146a expression as a non-invasive predictive biomarker for acute lymphoblastic leukemia.

Authors:  Samiah Shahid; Wajeehah Shahid; Jawaria Shaheen; M Waheed Akhtar; Saima Sadaf
Journal:  Sci Rep       Date:  2021-11-23       Impact factor: 4.379

  1 in total

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