Literature DB >> 30034925

Automatic Methods to Extract New York Heart Association Classification from Clinical Notes.

Rui Zhang1, Sisi Ma2, Liesa Shanahan3, Jessica Munroe3, Sarah Horn4, Stuart Speedie5.   

Abstract

Cardiac Resynchronization Therapy (CRT) is an established pacing therapy for heart failure patients. The New York Heart Association (NYHA) classification is often used as a measure of a patient's response to CRT. Identifying NYHA class for heart failure patients in an electronic health record (EHR) consistently, over time, can provide better understanding of the progression of heart failure and assessment of CRT response and effectiveness. However, NYHA is rarely stored in EHR structured data such information is often documented in unstructured clinical notes. In this study, we thus investigated the use of natural language processing (NLP) methods to identify NYHA classification from clinical notes. We collected 6,174 clinical notes that were matched with hospital-specific custom NYHA class diagnosis codes. Machine-learning based methods performed similar with a rule-based method. The best machine-learning method, support vector machine with n-gram features, performed the best (93% F-measure). Further validation of the findings is required.

Entities:  

Keywords:  Clinical Notes; Electronic Health Records; Natural Language Processing; New York Heart Association (NYHA)

Year:  2017        PMID: 30034925      PMCID: PMC6051704          DOI: 10.1109/BIBM.2017.8217848

Source DB:  PubMed          Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)        ISSN: 2156-1125


  14 in total

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Journal:  J Am Med Inform Assoc       Date:  2015-09-02       Impact factor: 4.497

2.  Heart Disease and Stroke Statistics-2016 Update: A Report From the American Heart Association.

Authors:  Dariush Mozaffarian; Emelia J Benjamin; Alan S Go; Donna K Arnett; Michael J Blaha; Mary Cushman; Sandeep R Das; Sarah de Ferranti; Jean-Pierre Després; Heather J Fullerton; Virginia J Howard; Mark D Huffman; Carmen R Isasi; Monik C Jiménez; Suzanne E Judd; Brett M Kissela; Judith H Lichtman; Lynda D Lisabeth; Simin Liu; Rachel H Mackey; David J Magid; Darren K McGuire; Emile R Mohler; Claudia S Moy; Paul Muntner; Michael E Mussolino; Khurram Nasir; Robert W Neumar; Graham Nichol; Latha Palaniappan; Dilip K Pandey; Mathew J Reeves; Carlos J Rodriguez; Wayne Rosamond; Paul D Sorlie; Joel Stein; Amytis Towfighi; Tanya N Turan; Salim S Virani; Daniel Woo; Robert W Yeh; Melanie B Turner
Journal:  Circulation       Date:  2015-12-16       Impact factor: 29.690

3.  Key issues in end point selection for heart failure trials: composite end points.

Authors:  James D Neaton; Gerry Gray; Bram D Zuckerman; Marvin A Konstam
Journal:  J Card Fail       Date:  2005-10       Impact factor: 5.712

4.  2012 EHRA/HRS expert consensus statement on cardiac resynchronization therapy in heart failure: implant and follow-up recommendations and management.

Authors:  Jean-Claude Daubert; Leslie Saxon; Philip B Adamson; Angelo Auricchio; Ronald D Berger; John F Beshai; Ole Breithard; Michele Brignole; John Cleland; David B Delurgio; Kenneth Dickstein; Derek V Exner; Michael Gold; Richard A Grimm; David L Hayes; Carsten Israel; Christophe Leclercq; Cecilia Linde; Joann Lindenfeld; Bela Merkely; Lluis Mont; Francis Murgatroyd; Frits Prinzen; Samir F Saba; Jerold S Shinbane; Jagmeet Singh; Anthony S Tang; Panos E Vardas; Bruce L Wilkoff; Jose Luis Zamorano
Journal:  Heart Rhythm       Date:  2012-09       Impact factor: 6.343

Review 5.  Non-responders to cardiac resynchronization therapy: the magnitude of the problem and the issues.

Authors:  Angelo Auricchio; Frits W Prinzen
Journal:  Circ J       Date:  2011-02-11       Impact factor: 2.993

6.  The effect of cardiac resynchronization on morbidity and mortality in heart failure.

Authors:  John G F Cleland; Jean-Claude Daubert; Erland Erdmann; Nick Freemantle; Daniel Gras; Lukas Kappenberger; Luigi Tavazzi
Journal:  N Engl J Med       Date:  2005-03-07       Impact factor: 91.245

7.  Cardiac-resynchronization therapy for the prevention of heart-failure events.

Authors:  Arthur J Moss; W Jackson Hall; David S Cannom; Helmut Klein; Mary W Brown; James P Daubert; N A Mark Estes; Elyse Foster; Henry Greenberg; Steven L Higgins; Marc A Pfeffer; Scott D Solomon; David Wilber; Wojciech Zareba
Journal:  N Engl J Med       Date:  2009-09-01       Impact factor: 91.245

8.  Clinical outcome endpoints in heart failure trials: a European Society of Cardiology Heart Failure Association consensus document.

Authors:  Faiez Zannad; Angeles Alonso Garcia; Stefan D Anker; Paul W Armstrong; Gonzalo Calvo; John G F Cleland; Jay N Cohn; Kenneth Dickstein; Michael J Domanski; Inger Ekman; Gerasimos S Filippatos; Mihai Gheorghiade; Adrian F Hernandez; Tiny Jaarsma; Joerg Koglin; Marvin Konstam; Stuart Kupfer; Aldo P Maggioni; Alexandre Mebazaa; Marco Metra; Christina Nowack; Burkert Pieske; Ileana L Piña; Stuart J Pocock; Piotr Ponikowski; Giuseppe Rosano; Luis M Ruilope; Frank Ruschitzka; Thomas Severin; Scott Solomon; Kenneth Stein; Norman L Stockbridge; Wendy Gattis Stough; Karl Swedberg; Luigi Tavazzi; Adriaan A Voors; Scott M Wasserman; Holger Woehrle; Andrew Zalewski; John J V McMurray
Journal:  Eur J Heart Fail       Date:  2013-06-19       Impact factor: 15.534

Review 9.  Extracting information from the text of electronic medical records to improve case detection: a systematic review.

Authors:  Elizabeth Ford; John A Carroll; Helen E Smith; Donia Scott; Jackie A Cassell
Journal:  J Am Med Inform Assoc       Date:  2016-02-05       Impact factor: 4.497

10.  NLP-PIER: A Scalable Natural Language Processing, Indexing, and Searching Architecture for Clinical Notes.

Authors:  Reed McEwan; Genevieve B Melton; Benjamin C Knoll; Yan Wang; Gretchen Hultman; Justin L Dale; Tim Meyer; Serguei V Pakhomov
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2016-07-20
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  2 in total

1.  Discovering and identifying New York heart association classification from electronic health records.

Authors:  Rui Zhang; Sisi Ma; Liesa Shanahan; Jessica Munroe; Sarah Horn; Stuart Speedie
Journal:  BMC Med Inform Decis Mak       Date:  2018-07-23       Impact factor: 2.796

2.  Prediction of Heart Disease Using a Combination of Machine Learning and Deep Learning.

Authors:  Rohit Bharti; Aditya Khamparia; Mohammad Shabaz; Gaurav Dhiman; Sagar Pande; Parneet Singh
Journal:  Comput Intell Neurosci       Date:  2021-07-01
  2 in total

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