| Literature DB >> 30029537 |
Kai Zhang1, Peng Zhang2, Ze-Ren Wang3, Xu-Liang Zhu4, Ying-Bo Lu5, Cheng-Bo Guan6, Yanhui Li7.
Abstract
It is always a difficult task to assign the peaks recorded from a vibrational spectrum. Herein, we explored a new pathway of density functional theory (DFT) simulation to present three kinds of spectra of ice XIV that can be referenced as inelastic neutron scattering (INS), infrared (IR), and Raman experimental spectrum. The INS spectrum is proportional to the phonon density of states (PDOS) while the photon scattering signals reflect the normal vibration frequencies near the Brillouin zone (BZ) center. Based on good agreements with the experimental data, we identified the relative frequency and made scientific assignments through normal vibration modes analysis. The two hydrogen bond (H-bond) peaks among the ice phases from INS were discussed and the dynamic process of the H-bond vibrations was found to be classified into two basic modes. We deduced that two H-bond modes are a general rule among the ice family and more studies are ongoing to investigate this subject.Entities:
Keywords: CASTEP; DFT; first-principles; hydrogen bond; ice XIV; vibrational spectrum
Mesh:
Substances:
Year: 2018 PMID: 30029537 PMCID: PMC6099920 DOI: 10.3390/molecules23071781
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1The simulated spectrum of ice XIV. The four images correspond to four vibration bands: translation, libration, bending, and stretching. Each image from top to bottom is Raman, IR, and the PDOS spectrum, respectively. Weak peaks were amplified reasonably.
Comparison of calculated results with Raman and INS data. The main peaks of PDOS in the first column are compared against INS spectrum. The frequencies of 105 normal vibration modes with Raman intensities are compared against the experimental Raman peaks.
| PDOS | Neutr. Scattering (References [ | Normal Modes | Raman Intensity | Raman Scattering (References [ |
|---|---|---|---|---|
| 53 | 56/— | 62 | 0.01 | |
| 75 | 80/— | 82 | 0.00 | |
| 83 | 0.03 | |||
| 84 | 0.11 | |||
| 88 | 96/— | 90 | 0.00 | |
| 92 | 0.00 | |||
| 94 | 0.17 | |||
| 95 | 0.06 | |||
| 104 | 100 | 0.08 | ||
| 101 | 0.10 | |||
| 102 | 0.01 | |||
| 113 | 104 | 0.03 | ||
| 128 | 127 | 0.00 | ||
| 128 | 0.04 | |||
| 129 | 0.00 | |||
| 142 | 138 | 0.18 | ||
| 153 | 0.01 | |||
| 159 | 160/— | 154 | 0.02 | |
| 166 | 162 | 0.00 | ||
| 169 | 2.21 | |||
| 176 | 1.70 | |||
| 178 | 2.42 | 214/192/195 | ||
| 188 | 192/— | 192 | 0.93 | |
| 193 | 0.11 | |||
| 194 | 0.01 | |||
| 199 | —/~208 | 199 | 0.16 | |
| 209 | 0.07 | |||
| 226 | 211 | 0.67 | 241/—/— | |
| 248 | 236 | 0.14 | ||
| 277 | 0.17 | 314/—/— | ||
| 279 | 279 | 0.16 | ||
| 288 | —/~288 | 289 | 0.00 | |
| 292 | 0.08 | |||
| 504 | ~464/— | 502 | 0.39 | |
| 512 | 510 | 0.06 | ||
| 518 | 3.88 | 462/490/470 | ||
| 523 | 0.45 | |||
| 524 | 1.23 | 488/—/— | ||
| 543 | 545 | 0.01 | ||
| 563 | ~560/— | 570 | 0.25 | |
| 583 | 4.54 | 527/—/— | ||
| 585 | 4.34 | 562/—/553 | ||
| 593 | 591 | 1.13 | ||
| 612 | 613 | 0.55 | ||
| 620 | 0.01 | |||
| 625 | 1.51 | |||
| 631 | 0.20 | |||
| 632 | 0.61 | |||
| 639 | ~632/— | 642 | 0.09 | |
| 643 | 1.56 | |||
| 652 | 657 | 1.41 | ||
| 671 | 3.72 | |||
| 688 | 684 | 1.34 | ||
| 695 | 0.05 | |||
| 701 | 6.14 | |||
| 705 | 702 | 2.20 | ||
| 725 | 724 | 1.10 | ||
| 729 | 1.14 | |||
| 748 | 733 | 1.30 | ||
| 757 | ~760/— | 751 | 0.03 | |
| 777 | 790 | 0.42 | ||
| 796 | 798 | 1.50 | 790/—/— | |
| 817 | 817 | 0.49 | ||
| 846 | 845 | 0.43 | ||
| 853 | 2.00 | |||
| 876 | 874 | 0.51 | ||
| 903 | ~904/— | 891 | 10.72 | 867/—/— |
| 930 | 932 | 0.00 | ||
| 933 | 1.50 | |||
| 1647 | 1.24 | |||
| 1661 | 4.30 | |||
| 1665 | 1663 | 5.87 | ||
| 1668 | 1.15 | |||
| 1669 | 1.42 | |||
| 1671 | 0.04 | |||
| 1687 | 1684 | 1.46 | ||
| 1693 | 1705 | 0.32 | ||
| 1720 | 1722 | 0.01 | ||
| 1727 | 1725 | 1.05 | ||
| 1734 | 0.10 | |||
| 1735 | 0.80 | |||
| 3234 | 1519.40 | 3214/3215/3209 | ||
| 3238 | 3235 | 15.13 | ||
| 3260 | 3269 | 1975.96 | 3317/—/3310 | |
| 3283 | 3275 | 22.23 | ||
| 3302 | 3322 | 1.01 | ||
| 3333 | 3334 | 72.87 | ||
| 3343 | 1510.66 | 3326/—/— | ||
| 3351 | 0.17 | |||
| 3358 | 3352 | 21.79 | ||
| 3375 | 931.33 | 3346/—/3340 | ||
| 3376 | 3377 | 37.50 | ~3348/—/— | |
| 3390 | 26.01 | |||
| 3395 | 343.97 | 3368/—/— | ||
| 3400 | 3398 | 41.58 | ||
| 3402 | 170.77 | |||
| 3411 | 3411 | 31.95 | ||
| 3447 | 0.61 | |||
| 3449 | 3450 | 77.66 | ||
| 3451 | 434.71 | ~3407/3410/3415 | ||
| 3458 | 12.08 | |||
| 3465 | 38.95 | |||
| 3467 | 17.76 | |||
| 3473 | 3470 | 104.38 | ||
| 3478 | 396.50 |
Figure 2A top view of four normal vibration modes in the stretching band (3234 cm−1, 3478 cm−1) and bending band (1647 cm−1, 1705 cm−1), respectively. Typical vibrations are represented in gold. The green arrows represent the vibration direction in sizes proportional to the vibration amplitude.
Figure 3A top view of the four normal vibration modes in the libration band (656 cm−1, 695 cm−1) and translation band (194 cm−1, 291 cm−1), respectively. For the dynamic process of weak and strong H-bond, please see the Supplementary Videos S1 and S2 (194.mp4 and 292.mp4).