Literature DB >> 30025885

Superensemble forecast of respiratory syncytial virus outbreaks at national, regional, and state levels in the United States.

Julia Reis1, Teresa Yamana2, Sasikiran Kandula2, Jeffrey Shaman2.   

Abstract

Respiratory syncytial virus (RSV) infections peak during the winter months in the United States, yet the timing, intensity, and onset of these outbreaks vary each year. An RSV vaccine is on the cusp of being released; precise models and accurate forecasts of RSV epidemics may prove vital for planning where and when the vaccine should be deployed. Accurate forecasts with sufficient spatial and temporal resolution could also be used to support the prevention or treatment of RSV infections. Previously, we developed and validated an RSV forecast system at the regional scale in the United States. This model-inference system had considerable forecast skill, relative to the historical expectance, for outbreak peak intensity, total outbreak size, and onset, but only marginal skill for predicting the timing of the outbreak peak. Here, we use a superensemble approach to combine three forecasting methods for RSV prediction in the US at three different spatial resolutions: national, regional, and state. At the regional and state levels, we find a substantial improvement of forecast skill, relative to historical expectance, for peak intensity, timing, and onset outbreak up to two months in advance of the predicted outbreak peak. Moreover, due to the greater variability of RSV outbreaks at finer spatial scales, we find that improvement of forecast skill at the state level exceeds that at the regional and national levels. Such finer scale superensemble forecasts may be more relevant for effecting local-scale interventions, particularly in communities with a high burden of RSV infection.
Copyright © 2018 The Authors. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Bayesian modeling; Computational biology; Epidemics; Forecast; Infectious disease; Outbreaks; RSV; Superensemble

Mesh:

Year:  2018        PMID: 30025885     DOI: 10.1016/j.epidem.2018.07.001

Source DB:  PubMed          Journal:  Epidemics        ISSN: 1878-0067            Impact factor:   4.396


  5 in total

1.  Comparing trained and untrained probabilistic ensemble forecasts of COVID-19 cases and deaths in the United States.

Authors:  Evan L Ray; Logan C Brooks; Jacob Bien; Matthew Biggerstaff; Nikos I Bosse; Johannes Bracher; Estee Y Cramer; Sebastian Funk; Aaron Gerding; Michael A Johansson; Aaron Rumack; Yijin Wang; Martha Zorn; Ryan J Tibshirani; Nicholas G Reich
Journal:  Int J Forecast       Date:  2022-07-01

2.  Simulation of the COVID-19 patient flow and investigation of the future patient arrival using a time-series prediction model: a real-case study.

Authors:  Mahdieh Tavakoli; Reza Tavakkoli-Moghaddam; Reza Mesbahi; Mohssen Ghanavati-Nejad; Amirreza Tajally
Journal:  Med Biol Eng Comput       Date:  2022-02-12       Impact factor: 3.079

Review 3.  Use of mathematical modelling to assess respiratory syncytial virus epidemiology and interventions: a literature review.

Authors:  John C Lang
Journal:  J Math Biol       Date:  2022-02-26       Impact factor: 2.259

Review 4.  The roles of machine learning methods in limiting the spread of deadly diseases: A systematic review.

Authors:  Rayner Alfred; Joe Henry Obit
Journal:  Heliyon       Date:  2021-06-23

5.  Projections of epidemic transmission and estimation of vaccination impact during an ongoing Ebola virus disease outbreak in Northeastern Democratic Republic of Congo, as of Feb. 25, 2019.

Authors:  Lee Worden; Rae Wannier; Nicole A Hoff; Kamy Musene; Bernice Selo; Mathias Mossoko; Emile Okitolonda-Wemakoy; Jean Jacques Muyembe Tamfum; George W Rutherford; Thomas M Lietman; Anne W Rimoin; Travis C Porco; J Daniel Kelly
Journal:  PLoS Negl Trop Dis       Date:  2019-08-05
  5 in total

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